##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data SeqArray
###
##############################################################################
##############################################################################


* checking for file ‘SeqArray/DESCRIPTION’ ... OK
* preparing ‘SeqArray’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘OverviewSlides.Rmd’ using rmarkdown
--- finished re-building ‘OverviewSlides.Rmd’

--- re-building ‘SeqArray.Rmd’ using rmarkdown

Quitting from SeqArray.Rmd:293-299 [unnamed-chunk-11]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `renameSeqlevels()`:
! could not find function "renameSeqlevels"
---
Backtrace:
    ▆
 1. └─SeqArray::seqAsVCF(file, chr.prefix = "chr")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'SeqArray.Rmd' failed with diagnostics:
could not find function "renameSeqlevels"
--- failed re-building ‘SeqArray.Rmd’

--- re-building ‘SeqArrayTutorial.Rmd’ using rmarkdown
--- finished re-building ‘SeqArrayTutorial.Rmd’

SUMMARY: processing the following file failed:
  ‘SeqArray.Rmd’

Error: Vignette re-building failed.
Execution halted