############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SVP ### ############################################################################## ############################################################################## * checking for file ‘SVP/DESCRIPTION’ ... OK * preparing ‘SVP’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... OK * cleaning src * checking for LF line-endings in source and make files and shell scripts * checking for empty or unneeded directories * looking to see if a ‘data/datalist’ file should be added NB: this package now depends on R (>= 4.1.0) WARNING: Added dependency on R >= 4.1.0 because package code uses the pipe |> or function shorthand \(...) syntax added in R 4.1.0. File(s) using such syntax: ‘LISAResult.Rd’ ‘LISAsce-method.Rd’ ‘SVP-accessors.Rd’ ‘SVPExperiment.Rd’ ‘as_tbl_df.Rd’ ‘bivar-internal.R’ ‘cal_lisa_f1-method.Rd’ ‘cluster.assign-method.Rd’ ‘fast_cor.Rd’ ‘fscoreDfs.Rd’ ‘internals.R’ ‘lisa-internal.R’ ‘methods-accessor.R’ ‘methods-detect.marker.R’ ‘methods-encode.R’ ‘methods-lisaRes.R’ ‘methods-mca.R’ ‘methods-plot.R’ ‘plot_heatmap_globalbv.Rd’ ‘pred.cell.signature-method.Rd’ ‘runCORR-method.Rd’ ‘runDetectMarker-method.Rd’ ‘runDetectSVG-method.Rd’ ‘runGLOBALBV-method.Rd’ ‘runKldSVG-method.Rd’ ‘runLISA-method.Rd’ ‘runLOCALBV-method.Rd’ ‘runMCA-method.Rd’ ‘runSGSA-method.Rd’ ‘runWKDE-method.Rd’ ‘svDfs.Rd’ ‘svp-internals.R’ * building ‘SVP_1.1.0.tar.gz’