############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ProteoDisco ### ############################################################################## ############################################################################## * checking for file ‘ProteoDisco/DESCRIPTION’ ... OK * preparing ‘ProteoDisco’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘Overview_ProteoDisco.Rmd’ using rmarkdown Quitting from Overview_ProteoDisco.Rmd:185-188 [Inspection] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! 'organism' is not an exported object from 'namespace:GenomeInfoDb' --- Backtrace: ▆ 1. ├─base::print(ProteoDiscography.hg19) 2. └─ProteoDisco:::print.ProteoDiscography(ProteoDiscography.hg19) 3. ├─base::summary(x, ...) 4. └─ProteoDisco:::summary.ProteoDiscography(x, ...) 5. ├─base::cat(...) 6. ├─base::sprintf(...) 7. └─base::unique(GenomeInfoDb::organism(object@TxDb)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Overview_ProteoDisco.Rmd' failed with diagnostics: 'organism' is not an exported object from 'namespace:GenomeInfoDb' --- failed re-building ‘Overview_ProteoDisco.Rmd’ SUMMARY: processing the following file failed: ‘Overview_ProteoDisco.Rmd’ Error: Vignette re-building failed. Execution halted