############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 NanoStringNCTools ### ############################################################################## ############################################################################## * checking for file ‘NanoStringNCTools/DESCRIPTION’ ... OK * preparing ‘NanoStringNCTools’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘Introduction.Rmd’ using rmarkdown Quitting from Introduction.Rmd:217-232 [unnamed-chunk-9] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `multiassign()`: ! envir argument is not an environment --- Backtrace: ▆ 1. ├─NanoStringNCTools::assayDataApply(...) 2. └─NanoStringNCTools::assayDataApply(...) 3. └─NanoStringNCTools (local) .local(X, MARGIN, FUN, ...) 4. └─NanoStringNCTools:::.apply(...) 5. └─Biobase::multiassign(names(.kvs), .kvs, environment(FUN)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Introduction.Rmd' failed with diagnostics: envir argument is not an environment --- failed re-building ‘Introduction.Rmd’ SUMMARY: processing the following file failed: ‘Introduction.Rmd’ Error: Vignette re-building failed. Execution halted