############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 MungeSumstats ### ############################################################################## ############################################################################## * checking for file ‘MungeSumstats/DESCRIPTION’ ... OK * preparing ‘MungeSumstats’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘MungeSumstats.Rmd’ using rmarkdown Quitting from MungeSumstats.Rmd:261-272 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! To use dbSNP=155 on GRCh37, please install the Bioconductor package 'SNPlocs.Hsapiens.dbSNP155.GRCh37'. --- Backtrace: ▆ 1. └─MungeSumstats::format_sumstats(...) 2. └─MungeSumstats:::validate_parameters(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'MungeSumstats.Rmd' failed with diagnostics: To use dbSNP=155 on GRCh37, please install the Bioconductor package 'SNPlocs.Hsapiens.dbSNP155.GRCh37'. --- failed re-building ‘MungeSumstats.Rmd’ --- re-building ‘OpenGWAS.Rmd’ using rmarkdown --- finished re-building ‘OpenGWAS.Rmd’ --- re-building ‘docker.Rmd’ using rmarkdown --- finished re-building ‘docker.Rmd’ SUMMARY: processing the following file failed: ‘MungeSumstats.Rmd’ Error: Vignette re-building failed. Execution halted