############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 Macarron ### ############################################################################## ############################################################################## * checking for file ‘Macarron/DESCRIPTION’ ... OK * preparing ‘Macarron’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘Macarron.Rmd’ using rmarkdown Quitting from Macarron.Rmd:92-106 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! error in evaluating the argument 'x' in selecting a method for function 'as.data.frame': invalid 'n' - must contain at least one non-missing element, got none. --- Backtrace: ▆ 1. ├─Macarron::Macarron(...) 2. │ └─Macarron::showBest(...) 3. │ ├─BiocGenerics::as.data.frame(...) 4. │ ├─base::do.call(rbind, lapply(test.phenotypes, digest.each)) 5. │ └─base::lapply(test.phenotypes, digest.each) 6. │ └─Macarron (local) FUN(X[[i]], ...) 7. │ ├─utils::head(...) 8. │ └─utils (local) head.data.frame(...) 9. │ └─utils::.checkHT(n, d <- dim(x)) 10. │ └─base::stop(simpleError(msg, call = sys.call(-1L))) 11. └─base (local) ``(``) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Macarron.Rmd' failed with diagnostics: error in evaluating the argument 'x' in selecting a method for function 'as.data.frame': invalid 'n' - must contain at least one non-missing element, got none. --- failed re-building ‘Macarron.Rmd’ SUMMARY: processing the following file failed: ‘Macarron.Rmd’ Error: Vignette re-building failed. Execution halted