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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HVP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HVP_0.99.5.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.22-bioc/meat/HVP.Rcheck’
* using R version 4.5.1 Patched (2025-06-14 r88325)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 16.0.0 (clang-1600.0.26.6)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘HVP/DESCRIPTION’ ... OK
* this is package ‘HVP’ version ‘0.99.5’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HVP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
plot,hvp-missing: no visible global function definition for ‘ggplot’
plot,hvp-missing: no visible global function definition for
  ‘geom_histogram’
plot,hvp-missing: no visible global function definition for ‘aes’
plot,hvp-missing: no visible binding for global variable ‘hvp’
plot,hvp-missing: no visible global function definition for
  ‘geom_vline’
plot,hvp-missing: no visible global function definition for ‘theme’
plot,hvp-missing: no visible global function definition for
  ‘element_blank’
plot,hvp-missing: no visible global function definition for ‘labs’
plot,hvp-missing: no visible global function definition for ‘annotate’
Undefined global functions or variables:
  aes annotate element_blank geom_histogram geom_vline ggplot hvp labs
  theme
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.22-bioc/meat/HVP.Rcheck/00check.log’
for details.