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### Running command:
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###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 GeomxTools
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* checking for file ‘GeomxTools/DESCRIPTION’ ... OK
* preparing ‘GeomxTools’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Developer_Introduction_to_the_NanoStringGeoMxSet.Rmd’ using rmarkdown

Quitting from Developer_Introduction_to_the_NanoStringGeoMxSet.Rmd:197-211 [applyFunctions]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `multiassign()`:
! envir argument is not an environment
---
Backtrace:
    ▆
 1. ├─NanoStringNCTools::assayDataApply(...)
 2. └─NanoStringNCTools::assayDataApply(...)
 3.   └─NanoStringNCTools (local) .local(X, MARGIN, FUN, ...)
 4.     └─NanoStringNCTools:::.apply(...)
 5.       └─Biobase::multiassign(names(.kvs), .kvs, environment(FUN))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Developer_Introduction_to_the_NanoStringGeoMxSet.Rmd' failed with diagnostics:
envir argument is not an environment
--- failed re-building ‘Developer_Introduction_to_the_NanoStringGeoMxSet.Rmd’

--- re-building ‘GeomxSet_coercions.Rmd’ using rmarkdown
Calculating gene variances
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating feature variances of standardized and clipped values
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|

  |                                                                            
  |                                                                      |   0%
  |                                                                            
  |===================================                                   |  50%
  |                                                                            
  |======================================================================| 100%
Using method 'umap'
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating gene variances
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating feature variances of standardized and clipped values
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|

  |                                                                            
  |                                                                      |   0%
  |                                                                            
  |===================================                                   |  50%
  |                                                                            
  |======================================================================| 100%
Using method 'umap'
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
--- finished re-building ‘GeomxSet_coercions.Rmd’

--- re-building ‘Protein_in_GeomxTools.Rmd’ using rmarkdown
--- finished re-building ‘Protein_in_GeomxTools.Rmd’

SUMMARY: processing the following file failed:
  ‘Developer_Introduction_to_the_NanoStringGeoMxSet.Rmd’

Error: Vignette re-building failed.
Execution halted