############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD INSTALL GenomicTuples ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.22-bioc/R/library' * installing *source* package 'GenomicTuples' ... ** this is package 'GenomicTuples' version '1.43.0' ** using staged installation ** libs using C++ compiler: 'G__~1.EXE (GCC) 14.2.0' g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.22-bioc/R/library/Rcpp/include' -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c IPD.cpp -o IPD.o g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.22-bioc/R/library/Rcpp/include' -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.22-bioc/R/library/Rcpp/include' -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c allTuplesSorted.cpp -o allTuplesSorted.o g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.22-bioc/R/library/Rcpp/include' -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c pcompareGTuples.cpp -o pcompareGTuples.o g++ -std=gnu++17 -shared -s -static-libgcc -o GenomicTuples.dll tmp.def IPD.o RcppExports.o allTuplesSorted.o pcompareGTuples.o -LC:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools45/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.22-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.22-bioc/R/library/00LOCK-GenomicTuples/00new/GenomicTuples/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading No methods found in package 'GenomeInfoDb' for request: 'seqinfo<-' when loading 'GenomicTuples' No methods found in package 'GenomeInfoDb' for request: 'seqlevels<-' when loading 'GenomicTuples' No methods found in package 'GenomeInfoDb' for request: 'seqnames<-' when loading 'GenomicTuples' No methods found in package 'GenomeInfoDb' for request: 'isCircular' when loading 'GenomicTuples' No methods found in package 'GenomeInfoDb' for request: 'merge' when loading 'GenomicTuples' No methods found in package 'GenomeInfoDb' for request: 'seqinfo' when loading 'GenomicTuples' No methods found in package 'GenomeInfoDb' for request: 'seqlengths' when loading 'GenomicTuples' No methods found in package 'GenomeInfoDb' for request: 'seqlevels' when loading 'GenomicTuples' No methods found in package 'GenomeInfoDb' for request: 'seqnames' when loading 'GenomicTuples' ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location No methods found in package 'GenomeInfoDb' for request: 'seqinfo<-' when loading 'GenomicTuples' No methods found in package 'GenomeInfoDb' for request: 'seqlevels<-' when loading 'GenomicTuples' No methods found in package 'GenomeInfoDb' for request: 'seqnames<-' when loading 'GenomicTuples' No methods found in package 'GenomeInfoDb' for request: 'isCircular' when loading 'GenomicTuples' No methods found in package 'GenomeInfoDb' for request: 'merge' when loading 'GenomicTuples' No methods found in package 'GenomeInfoDb' for request: 'seqinfo' when loading 'GenomicTuples' No methods found in package 'GenomeInfoDb' for request: 'seqlengths' when loading 'GenomicTuples' No methods found in package 'GenomeInfoDb' for request: 'seqlevels' when loading 'GenomicTuples' No methods found in package 'GenomeInfoDb' for request: 'seqnames' when loading 'GenomicTuples' ** testing if installed package can be loaded from final location No methods found in package 'GenomeInfoDb' for request: 'seqinfo<-' when loading 'GenomicTuples' No methods found in package 'GenomeInfoDb' for request: 'seqlevels<-' when loading 'GenomicTuples' No methods found in package 'GenomeInfoDb' for request: 'seqnames<-' when loading 'GenomicTuples' No methods found in package 'GenomeInfoDb' for request: 'isCircular' when loading 'GenomicTuples' No methods found in package 'GenomeInfoDb' for request: 'merge' when loading 'GenomicTuples' No methods found in package 'GenomeInfoDb' for request: 'seqinfo' when loading 'GenomicTuples' No methods found in package 'GenomeInfoDb' for request: 'seqlengths' when loading 'GenomicTuples' No methods found in package 'GenomeInfoDb' for request: 'seqlevels' when loading 'GenomicTuples' No methods found in package 'GenomeInfoDb' for request: 'seqnames' when loading 'GenomicTuples' ** testing if installed package keeps a record of temporary installation path * DONE (GenomicTuples)