############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data GeneTonic ### ############################################################################## ############################################################################## * checking for file ‘GeneTonic/DESCRIPTION’ ... OK * preparing ‘GeneTonic’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘GeneTonic_manual.Rmd’ using rmarkdown Quitting from GeneTonic_manual.Rmd:125-135 [create_dds] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `library()`: ! there is no package called 'macrophage' --- Backtrace: ▆ 1. └─base::library("macrophage") ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'GeneTonic_manual.Rmd' failed with diagnostics: there is no package called 'macrophage' --- failed re-building ‘GeneTonic_manual.Rmd’ SUMMARY: processing the following file failed: ‘GeneTonic_manual.Rmd’ Error: Vignette re-building failed. Execution halted