############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r CelliD -R && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data CelliD ### ############################################################################## ############################################################################## * checking for file 'CelliD/DESCRIPTION' ... OK * preparing 'CelliD': * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to process help pages ----------------------------------- * installing *source* package 'CelliD' ... ** this is package 'CelliD' version '1.17.0' ** using staged installation ** libs using C++ compiler: 'G__~1.EXE (GCC) 14.2.0' using C++11 g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.22-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/RcppArmadillo/include' -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.22-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/RcppArmadillo/include' -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c dist.cpp -o dist.o g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.22-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/RcppArmadillo/include' -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mca.cpp -o mca.o g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.22-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/RcppArmadillo/include' -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c order.cpp -o order.o order.cpp: In function 'Rcpp::NumericMatrix fastOrder(Rcpp::NumericMatrix, Rcpp::NumericMatrix)': order.cpp:21:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare] 21 | for(int a = 0; a < C.n_cols; a = a + 1 ) { | ~~^~~~~~~~~~ g++ -shared -s -static-libgcc -o CelliD.dll tmp.def RcppExports.o dist.o mca.o order.o -fopenmp -LF:/biocbuild/bbs-3.22-bioc/R/bin/x64 -lRlapack -LF:/biocbuild/bbs-3.22-bioc/R/bin/x64 -lRblas -lgfortran -lquadmath -LC:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools45/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.22-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.22-bioc/tmpdir/RtmpQnFn5z/Rinst21d141b024834/00LOCK-CelliD/00new/CelliD/libs/x64 ** R ** data *** moving datasets to lazyload DB Warning: namespace 'Seurat' is not available and has been replaced by .GlobalEnv when processing object 'seuratPbmc' Warning: namespace 'Seurat' is not available and has been replaced by .GlobalEnv when processing object 'seuratPbmc' ** inst ** byte-compile and prepare package for lazy loading Error: package or namespace load failed for 'SeuratObject' in loadNamespace(j <- imp[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): there is no package called 'spam' Execution halted ERROR: lazy loading failed for package 'CelliD' * removing 'F:/biocbuild/bbs-3.22-bioc/tmpdir/RtmpQnFn5z/Rinst21d141b024834/CelliD' ----------------------------------- ERROR: package installation failed