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### Running command:
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###   /home/biocbuild/R/R/bin/R CMD check --install=check:CHETAH.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings CHETAH_1.25.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/CHETAH.Rcheck’
* using R version 4.5.0 (2025-04-11)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘CHETAH/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘CHETAH’ version ‘1.25.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘CHETAH’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘CHETAH-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: CHETAHclassifier
> ### Title: Identification of cell types aided by hierarchical clustering
> ### Aliases: CHETAHclassifier
> 
> ### ** Examples
> 
> data('input_mel')
> data('headneck_ref')
> ## Melanoma data from Tirosh et al. (2016) Science
> input_mel
class: SingleCellExperiment 
dim: 7943 150 
metadata(0):
assays(1): counts
rownames(7943): ELMO2 PNMA1 ... SLC39A6 CTSC
rowData names(0):
colnames(150): mel_cell1 mel_cell2 ... mel_cell149 mel_cell150
colData names(1): celltype_CHETAH
Loading required namespace: GenomeInfoDb
Failed with error:  ‘there is no package called ‘GenomeInfoDb’’
Error in .requirePackage(package) : 
  unable to load required package ‘GenomeInfoDb’
Calls: <Anonymous> ... .extendsForS3 -> extends -> getClassDef -> .requirePackage
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
   14. │               ├─methods::callNextMethod()
   15. │               └─SummarizedExperiment (local) .nextMethod(object = object)
   16. │                 ├─BiocGenerics::updateObject(object@rowRanges, ..., verbose = verbose)
   17. │                 └─GenomicRanges::updateObject(object@rowRanges, ..., verbose = verbose)
   18. │                   ├─BiocGenerics::updateObject(object@unlistData, ..., verbose = verbose)
   19. │                   └─GenomicRanges::updateObject(object@unlistData, ..., verbose = verbose)
   20. │                     └─BiocGenerics::updateObject(object@seqinfo, ..., verbose = verbose)
   21. └─methods:::.extendsForS3(`<chr>`)
   22.   └─methods::extends(Class, maybe = FALSE)
   23.     └─methods::getClassDef(class1)
   24.       └─methods:::.requirePackage(package)
  
  [ FAIL 3 | WARN 0 | SKIP 0 | PASS 0 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 ERRORs
See
  ‘/home/biocbuild/bbs-3.22-bioc/meat/CHETAH.Rcheck/00check.log’
for details.