############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data BiocBook ### ############################################################################## ############################################################################## * checking for file ‘BiocBook/DESCRIPTION’ ... OK * preparing ‘BiocBook’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘BiocBook.Rmd’ using rmarkdown Quitting from BiocBook.Rmd:63-68 [unnamed-chunk-1] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `open.connection()`: ! cannot open the connection to 'http://rpkg-api.gepuro.net/rpkg?q=myNewBook' --- Backtrace: ▆ 1. └─BiocBook::init("myNewBook", .local = TRUE) 2. └─BiocBook:::.preflight_checks(...) 3. ├─base::tryCatch(...) 4. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 5. └─available::available(name = new_package, browse = FALSE) 6. └─available::available_on_github(name) 7. ├─available:::gh_pkg(name) 8. │ ├─base::withVisible(eval(mc, parent.frame())) 9. │ └─base::eval(mc, parent.frame()) 10. │ └─base::eval(mc, parent.frame()) 11. └─available (local) ``(pkg = name) 12. └─jsonlite::fromJSON(...) 13. └─jsonlite:::parse_and_simplify(...) 14. └─jsonlite:::parseJSON(txt, bigint_as_char) 15. └─jsonlite:::parse_con(txt, bigint_as_char) 16. ├─base::open(con, "rb") 17. └─base::open.connection(con, "rb") ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'BiocBook.Rmd' failed with diagnostics: cannot open the connection to 'http://rpkg-api.gepuro.net/rpkg?q=myNewBook' --- failed re-building ‘BiocBook.Rmd’ SUMMARY: processing the following file failed: ‘BiocBook.Rmd’ Error: Vignette re-building failed. Execution halted