############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL Bioc.gff ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.5.0/site-library’ * installing *source* package ‘Bioc.gff’ ... ** this is package ‘Bioc.gff’ version ‘0.99.17’ ** using staged installation ** libs using C compiler: ‘aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0’ /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R-4.5.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.5.0/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.5.0/site-library/XVector/include' -I'/home/biocbuild/R/R-4.5.0/site-library/IRanges/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c R_init_Bioc_gff.c -o R_init_Bioc_gff.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R-4.5.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.5.0/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.5.0/site-library/XVector/include' -I'/home/biocbuild/R/R-4.5.0/site-library/IRanges/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c S4Vectors_stubs.c -o S4Vectors_stubs.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R-4.5.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.5.0/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.5.0/site-library/XVector/include' -I'/home/biocbuild/R/R-4.5.0/site-library/IRanges/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c XVector_stubs.c -o XVector_stubs.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R-4.5.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.5.0/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.5.0/site-library/XVector/include' -I'/home/biocbuild/R/R-4.5.0/site-library/IRanges/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c readGFF.c -o readGFF.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R-4.5.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.5.0/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.5.0/site-library/XVector/include' -I'/home/biocbuild/R/R-4.5.0/site-library/IRanges/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c utils.c -o utils.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -shared -L/home/biocbuild/R/R-4.5.0/lib -L/usr/local/lib -o Bioc.gff.so R_init_Bioc_gff.o S4Vectors_stubs.o XVector_stubs.o readGFF.o utils.o -L/home/biocbuild/R/R-4.5.0/lib -lR installing to /home/biocbuild/R/R-4.5.0/site-library/00LOCK-Bioc.gff/00new/Bioc.gff/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Bioc.gff)