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INSTALL report for derfinder on tokay2

This page was generated on 2019-04-09 12:21:24 -0400 (Tue, 09 Apr 2019).

Package 412/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
derfinder 1.17.1
Leonardo Collado-Torres
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/derfinder
Branch: master
Last Commit: efb0859
Last Changed Date: 2018-12-03 16:40:56 -0400 (Mon, 03 Dec 2018)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  ERROR 
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  ERROR  OK 
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  ERROR  OK 
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: derfinder
Version: 1.17.1
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/derfinder_1.17.1.tar.gz && rm -rf derfinder.buildbin-libdir && mkdir derfinder.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=derfinder.buildbin-libdir derfinder_1.17.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL derfinder_1.17.1.zip && rm derfinder_1.17.1.tar.gz derfinder_1.17.1.zip
StartedAt: 2019-04-08 20:40:30 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 20:42:07 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 96.6 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/derfinder_1.17.1.tar.gz && rm -rf derfinder.buildbin-libdir && mkdir derfinder.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=derfinder.buildbin-libdir derfinder_1.17.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL derfinder_1.17.1.zip && rm derfinder_1.17.1.tar.gz derfinder_1.17.1.zip
###
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 50  254k   50  128k    0     0   589k      0 --:--:-- --:--:-- --:--:--  606k
100  254k  100  254k    0     0  1140k      0 --:--:-- --:--:-- --:--:-- 1168k

install for i386

* installing *source* package 'derfinder' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'derfinder'
    finding HTML links ... done
    analyzeChr                              html  
    annotateRegions                         html  
    calculatePvalues                        html  
    calculateStats                          html  
    coerceGR                                html  
    collapseFullCoverage                    html  
    coverageToExon                          html  
    createBw                                html  
    createBwSample                          html  
    define_cluster                          html  
    derfinder-deprecated                    html  
    derfinder-package                       html  
    extendedMapSeqlevels                    html  
    filterData                              html  
    findRegions                             html  
    fullCoverage                            html  
    genomeData                              html  
    genomeDataRaw                           html  
    genomeFstats                            html  
    genomeInfo                              html  
    genomeRegions                           html  
    genomicState                            html  
    getRegionCoverage                       html  
    getTotalMapped                          html  
    loadCoverage                            html  
    makeGenomicState                        html  
    makeModels                              html  
    mergeResults                            html  
    preprocessCoverage                      html  
    railMatrix                              html  
    rawFiles                                html  
    regionMatrix                            html  
    sampleDepth                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'derfinder' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'derfinder' as derfinder_1.17.1.zip
* DONE (derfinder)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'derfinder' successfully unpacked and MD5 sums checked