Estefania Mancini
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/ASpli |
| Branch: master |
| Last Commit: 8c8d62f |
| Last Changed Date: 2019-01-04 13:13:06 -0400 (Fri, 04 Jan 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 13:16:39 -0400 (Tue, 09 Apr 2019).
| Package 85/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| ASpli 1.9.1 Estefania Mancini
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
| Package: ASpli |
| Version: 1.9.1 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:ASpli.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings ASpli_1.9.1.tar.gz |
| StartedAt: 2019-04-08 23:56:30 -0400 (Mon, 08 Apr 2019) |
| EndedAt: 2019-04-09 00:04:47 -0400 (Tue, 09 Apr 2019) |
| EllapsedTime: 497.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: ASpli.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:ASpli.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings ASpli_1.9.1.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/ASpli.Rcheck’
* using R Under development (unstable) (2019-03-18 r76245)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ASpli/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ASpli’ version ‘1.9.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ASpli’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
plotGenomicRegions 19.388 0.277 19.666
plotBins 11.511 0.236 11.747
ASpli-package 10.523 0.553 11.085
mergeBinDUAS-method 8.921 0.076 8.997
subset-methods 7.963 0.056 8.020
AsDiscover-methods 6.429 0.073 6.502
rds 6.056 0.030 6.087
readCounts 5.835 0.038 5.873
containsJunctions-function 5.276 0.046 5.322
filterDU-method 5.207 0.044 5.250
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
ASpli.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL ASpli ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’ * installing *source* package ‘ASpli’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ASpli)
ASpli.Rcheck/ASpli-Ex.timings
| name | user | system | elapsed | |
| ASpli-package | 10.523 | 0.553 | 11.085 | |
| AsDiscover-methods | 6.429 | 0.073 | 6.502 | |
| DUreport | 4.625 | 0.044 | 4.670 | |
| DUreportBinSplice-method | 4.642 | 0.048 | 4.691 | |
| acc_AS | 0.032 | 0.003 | 0.038 | |
| acc_DU | 0.009 | 0.001 | 0.014 | |
| acc_counts | 0.024 | 0.003 | 0.030 | |
| acc_features | 0.232 | 0.007 | 0.238 | |
| binGenome | 2.833 | 0.017 | 2.850 | |
| containsJunctions-function | 5.276 | 0.046 | 5.322 | |
| example_data | 0.805 | 0.035 | 0.845 | |
| filterDU-method | 5.207 | 0.044 | 5.250 | |
| getConditions-function | 0.011 | 0.001 | 0.013 | |
| junctionDUreport | 4.952 | 0.035 | 4.987 | |
| loadBAM | 0.197 | 0.004 | 0.201 | |
| mergeBinDUAS-method | 8.921 | 0.076 | 8.997 | |
| plotBins | 11.511 | 0.236 | 11.747 | |
| plotGenomicRegions | 19.388 | 0.277 | 19.666 | |
| rds | 6.056 | 0.030 | 6.087 | |
| readCounts | 5.835 | 0.038 | 5.873 | |
| subset-methods | 7.963 | 0.056 | 8.020 | |