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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MSstatsBioNet
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* checking for file ‘MSstatsBioNet/DESCRIPTION’ ... OK
* preparing ‘MSstatsBioNet’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘MSstatsBioNet.Rmd’ using rmarkdown

Quitting from MSstatsBioNet.Rmd:53-57 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 12/12 in VECTOR_ELT
---
Backtrace:
    ▆
 1. └─MSstatsConvert::FragPipetoMSstatsFormat(input, use_log_file = FALSE)
 2.   └─MSstatsConvert::MSstatsPreprocess(...)
 3.     └─MSstatsConvert:::.filterFewMeasurements(input, 1, FALSE)
 4.       ├─...[]
 5.       └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'MSstatsBioNet.Rmd' failed with diagnostics:
attempt access index 12/12 in VECTOR_ELT
--- failed re-building ‘MSstatsBioNet.Rmd’

--- re-building ‘PTM-Analysis.Rmd’ using rmarkdown
--- finished re-building ‘PTM-Analysis.Rmd’

SUMMARY: processing the following file failed:
  ‘MSstatsBioNet.Rmd’

Error: Vignette re-building failed.
Execution halted