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### Running command:
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###   chmod a+r TCGAWorkflow -R && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data TCGAWorkflow
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* checking for file 'TCGAWorkflow/DESCRIPTION' ... OK
* preparing 'TCGAWorkflow':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'TCGAWorkflow.Rmd' using rmarkdown

Quitting from TCGAWorkflow.Rmd:1691-1713 [getTagMatrix]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `keepStandardChromosomes()`:
! could not find function "keepStandardChromosomes"
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'TCGAWorkflow.Rmd' failed with diagnostics:
could not find function "keepStandardChromosomes"
--- failed re-building 'TCGAWorkflow.Rmd'

SUMMARY: processing the following file failed:
  'TCGAWorkflow.Rmd'

Error: Vignette re-building failed.
Execution halted