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###
### Running command:
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###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data RforProteomics
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* checking for file ‘RforProteomics/DESCRIPTION’ ... OK
* preparing ‘RforProteomics’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘RProtVis.Rmd’ using rmarkdown
--- finished re-building ‘RProtVis.Rmd’

--- re-building ‘RforProteomics.Rmd’ using rmarkdown
starting worker pid=1034383 on localhost:11433 at 11:39:27.788
starting worker pid=1034382 on localhost:11433 at 11:39:27.805
Loading required package: mzID
Loading required package: mzID
loaded mzID and set parent environment
loaded mzID and set parent environment
reading 55merge_omssa.mzid...
reading 55merge_tandem.mzid...
55merge_omssa.mzid DONE!
55merge_tandem.mzid DONE!

Quitting from RforProteomics.Rmd:553-555 [mzp]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `data.frame()`:
! arguments imply differing number of rows: 23, 21
---
Backtrace:
     ▆
  1. ├─MSnbase::plotMzDelta(rawms, reporters = TMT6, verbose = FALSE)
  2. └─MSnbase::plotMzDelta(rawms, reporters = TMT6, verbose = FALSE)
  3.   └─MSnbase (local) .local(object, ...)
  4.     └─MSnbase:::plotMzDelta_MSnExp(...)
  5.       └─BiocGenerics::cbind(PSMatch::getAminoAcids(), x_offset, y_offset)
  6.         ├─BiocGenerics (local) standardGeneric("cbind")
  7.         │ ├─BiocGenerics::eval(mc, env)
  8.         │ └─base::eval(mc, env)
  9.         │   └─base::eval(mc, env)
 10.         └─base::cbind(...)
 11.           └─base::cbind(deparse.level, ...)
 12.             └─base::data.frame(..., check.names = FALSE)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'RforProteomics.Rmd' failed with diagnostics:
arguments imply differing number of rows: 23, 21
--- failed re-building ‘RforProteomics.Rmd’

SUMMARY: processing the following file failed:
  ‘RforProteomics.Rmd’

Error: Vignette re-building failed.
Execution halted