############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data scruff ### ############################################################################## ############################################################################## * checking for file ‘scruff/DESCRIPTION’ ... OK * preparing ‘scruff’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘scruff.Rmd’ using rmarkdown 2025-09-22 17:40:35.128 R[32727:295371253] XType: Using static font registry. Quitting from scruff.Rmd:218-227 [visualize_reads] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! unable to find an inherited method for function 'geom_arrow' for signature 'data = "ggplot2::mapping"' --- Backtrace: ▆ 1. └─scruff::rview(bamExample, chr = "MT", start = start, end = end) 2. └─ggbio::geom_arrow(ggplot2::aes(color = umi)) 3. └─methods (local) ``(``, ``, ``) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'scruff.Rmd' failed with diagnostics: unable to find an inherited method for function 'geom_arrow' for signature 'data = "ggplot2::mapping"' --- failed re-building ‘scruff.Rmd’ SUMMARY: processing the following file failed: ‘scruff.Rmd’ Error: Vignette re-building failed. Execution halted