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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:microSTASIS.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings microSTASIS_1.10.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.22-bioc/meat/microSTASIS.Rcheck’
* using R version 4.5.2 (2025-10-31)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘microSTASIS/DESCRIPTION’ ... OK
* this is package ‘microSTASIS’ version ‘1.10.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘microSTASIS’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘TreeSummarizedExperiment’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... NOTE
Rd files without \alias:
  ‘microSTASIS.Rd’
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                        user system elapsed
plotmSlinesCV         43.508  2.795  37.241
mSerrorCV             43.686  2.380  37.657
iterativeClusteringCV 40.950  2.205  33.521
plotmSscatter         18.466  1.451  17.748
plotmSdynamics        18.605  1.128  17.447
plotmSheatmap         17.601  1.455  16.194
iterativeClustering   17.149  1.028  16.345
mSpreviz              16.728  1.345  15.363
mSmetadataGroups      16.434  1.155  15.398
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  Actual type: "object"
  ── Failure ('test-plotmSheatmap.R:3:3'): plotmSheatmap output is a list for plotting a ggplot object ──
  Expected `plotmSheatmap(...)` to have type "list".
  Actual type: "object"
  ── Failure ('test-plotmSlinesCV.R:3:3'): plotmSlineCV output is a list for plotting a ggplot object ──
  Expected `plotmSlinesCV(...)` to have type "list".
  Actual type: "object"
  ── Failure ('test-plotmSscatter.R:3:3'): plotmSscater output is a list for plotting a ggplot with ggside extension ──
  Expected `plotmSscatter(...)` to have type "list".
  Actual type: "object"
  
  [ FAIL 4 | WARN 21 | SKIP 0 | PASS 16 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR, 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.22-bioc/meat/microSTASIS.Rcheck/00check.log’
for details.