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### Running command:
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###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust
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* checking for file ‘immunoClust/DESCRIPTION’ ... OK
* preparing ‘immunoClust’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘immunoClust.Rnw’ using Sweave
Loading required package: flowCore
filtered from above:318
filtered from below:0

cluster 1(N=151) has 2 sub-cluster at 2 (15), ICL=143<>26
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (15), ICL=0<>26
Model Refinement takes 0.033 mins(max 1: 0.033)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 7 iterations

cluster 2(N=83) has 3 sub-cluster at 3 (6), ICL=98<>30
split 2 into 3 clusters
cluster 1(N=220) has 2 sub-cluster at 2 (5), ICL=50<>30
split 1 into 2 clusters
cluster 1(N=220) has 2 sub-cluster at 2 (5), ICL=0<>30
Model Refinement takes 0.05 mins(max 2: 0.033)
Fit Model 2 of (6/10) K=2->5 N=605
EM 5 takes 0 mins, 9 iterations

cluster 2(N=65) has 2 sub-cluster at 2 (8), ICL=44<>34
split 2 into 2 clusters
cluster 4(N=74) has 3 sub-cluster at 3 (23), ICL=13<>34
cluster 1(N=396) has 7 sub-cluster at 7 (22), ICL=4.3<>34
cluster 3(N=21) has 2 sub-cluster at 2 (6), ICL=1.6<>34
cluster 1(N=396) has 7 sub-cluster at 7 (22), ICL=0<>34
Model Refinement takes 0.05 mins(max 1: 0.017)
Fit Model 3 of (6/10) K=5->6 N=1210
EM 6 takes 0 mins, 9 iterations

cluster 3(N=45) has 2 sub-cluster at 2 (14), ICL=28<>37
cluster 6(N=140) has 2 sub-cluster at 2 (7), ICL=21<>37
cluster 5(N=143) has 3 sub-cluster at 3 (22), ICL=15<>37
cluster 4(N=53) has 3 sub-cluster at 3 (11), ICL=15<>37
cluster 2(N=75) has 5 sub-cluster at 5 (27), ICL=8.7<>37
cluster 2(N=75) has 5 sub-cluster at 5 (27), ICL=0<>37
Model Refinement takes 0.083 mins(max 1: 0.033)
Fit Model 4 of (6/10) K=6->6 N=2420
EM 6 takes 0.017 mins, 6 iterations

cluster 3(N=113) has 3 sub-cluster at 3 (7), ICL=74<>41
split 3 into 3 clusters
cluster 6(N=237) has 2 sub-cluster at 2 (6), ICL=47<>41
split 6 into 2 clusters
cluster 5(N=308) has 2 sub-cluster at 2 (7), ICL=43<>41
split 5 into 2 clusters
cluster 4(N=95) has 8 sub-cluster at 8 (20), ICL=28<>41
cluster 2(N=135) has 3 sub-cluster at 3 (15), ICL=20<>41
cluster 2(N=135) has 3 sub-cluster at 3 (15), ICL=0<>41
Model Refinement takes 0.12 mins(max 1: 0.033)
Fit Model 5 of (6/10) K=6->10 N=4841
EM 10 takes 0 mins, 8 iterations

cluster 2(N=295) has 3 sub-cluster at 3 (9), ICL=35<>45
cluster 3(N=61) has 3 sub-cluster at 3 (17), ICL=22<>45
cluster 10(N=27) has 2 sub-cluster at 2 (6), ICL=22<>45
cluster 6(N=202) has 6 sub-cluster at 6 (38), ICL=21<>45
cluster 7(N=185) has 6 sub-cluster at 7 (19), ICL=16<>45
cluster 4(N=164) has 6 sub-cluster at 7 (36), ICL=11<>45
cluster 5(N=40) has 2 sub-cluster at 3 (12), ICL=8<>45
cluster 9(N=434) has 7 sub-cluster at 7 (34), ICL=7<>45
cluster 2(N=295) has 3 sub-cluster at 3 (9), ICL=0<>45
Model Refinement takes 0.18 mins(max 1: 0.05)
Fit Model 6 of (6/10) K=10->10 N=9682
EM 10 takes 0.017 mins, 5 iterations

cluster 2(N=556) has 3 sub-cluster at 3 (11), ICL=66<>48
split 2 into 3 clusters
cluster 6(N=392) has 2 sub-cluster at 2 (13), ICL=41<>48
cluster 9(N=909) has 3 sub-cluster at 3 (7), ICL=31<>48
cluster 10(N=59) has 2 sub-cluster at 2 (7), ICL=29<>48
cluster 3(N=122) has 3 sub-cluster at 3 (28), ICL=26<>48
cluster 7(N=363) has 2 sub-cluster at 2 (7), ICL=16<>48
cluster 5(N=75) has 2 sub-cluster at 3 (6), ICL=0.16<>48
cluster 2(N=556) has 3 sub-cluster at 3 (11), ICL=0<>48
Model Refinement takes 0.23 mins(max 1: 0.067)
Fit Model 7 of (6/10) K=10->12 N=9682
EM 12 takes 0.017 mins, 4 iterations

cluster 11(N=898) has 2 sub-cluster at 2 (34), ICL=54<>48
split 11 into 2 clusters
cluster 8(N=391) has 2 sub-cluster at 2 (8), ICL=37<>48
cluster 12(N=60) has 2 sub-cluster at 2 (9), ICL=29<>48
cluster 5(N=122) has 3 sub-cluster at 3 (28), ICL=26<>48
cluster 4(N=87) has 2 sub-cluster at 2 (13), ICL=18<>48
cluster 9(N=372) has 2 sub-cluster at 2 (7), ICL=16<>48
cluster 2(N=362) has 6 sub-cluster at 7 (25), ICL=14<>48
cluster 7(N=74) has 3 sub-cluster at 4 (45), ICL=13<>48
cluster 3(N=181) has 3 sub-cluster at 4 (36), ICL=9.4<>48
cluster 6(N=308) has 2 sub-cluster at 2 (8), ICL=7.1<>48
cluster 2(N=362) has 6 sub-cluster at 7 (25), ICL=0<>48
Model Refinement takes 0.28 mins(max 1: 0.067)
Fit Model 8 of (6/10) K=12->13 N=9682
EM 13 takes 0.017 mins, 3 iterations

cluster 8(N=391) has 2 sub-cluster at 2 (8), ICL=37<>48
cluster 13(N=61) has 2 sub-cluster at 2 (9), ICL=31<>48
cluster 5(N=122) has 3 sub-cluster at 3 (28), ICL=26<>48
cluster 7(N=74) has 5 sub-cluster at 6 (81), ICL=19<>48
cluster 4(N=86) has 2 sub-cluster at 2 (6), ICL=18<>48
cluster 9(N=377) has 3 sub-cluster at 4 (25), ICL=18<>48
cluster 2(N=362) has 2 sub-cluster at 2 (7), ICL=12<>48
cluster 6(N=308) has 2 sub-cluster at 2 (7), ICL=6.7<>48
cluster 3(N=174) has 6 sub-cluster at 7 (37), ICL=5.9<>48
cluster 2(N=362) has 2 sub-cluster at 2 (7), ICL=0<>48
Model Refinement takes 0.3 mins(max 1: 0.067)
Fit Model 9 of (6/10) K=13->13 N=9682
EM 13 takes 0 mins, 3 iterations

Process completed at9

Major Iteration (Trans) (6/4) takes 1.4 mins
filtered from above:318
filtered from below:0

cluster 1(N=151) has 2 sub-cluster at 2 (15), ICL=175<>22
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (15), ICL=0<>22
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 8 iterations

cluster 2(N=77) has 3 sub-cluster at 3 (9), ICL=95<>25
split 2 into 3 clusters
cluster 1(N=228) has 4 sub-cluster at 4 (27), ICL=29<>25
split 1 into 4 clusters
cluster 1(N=228) has 4 sub-cluster at 4 (27), ICL=0<>25
Model Refinement takes 0.017 mins(max 2: 0.017)
Fit Model 2 of (6/10) K=2->7 N=605
EM 7 takes 0 mins, 27 iterations

cluster 7(N=77) has 2 sub-cluster at 2 (5), ICL=48<>28
split 7 into 2 clusters
cluster 2(N=241) has 2 sub-cluster at 2 (100), ICL=20<>28
cluster 6(N=58) has 4 sub-cluster at 4 (30), ICL=17<>28
cluster 5(N=70) has 3 sub-cluster at 3 (29), ICL=15<>28
cluster 1(N=244) has 5 sub-cluster at 7 (45), ICL=10<>28
cluster 3(N=16) has 2 sub-cluster at 2 (100), ICL=8.2<>28
cluster 1(N=244) has 5 sub-cluster at 7 (45), ICL=0<>28
Model Refinement takes 0.067 mins(max 1: 0.017)
Fit Model 3 of (6/10) K=7->8 N=1210
EM 7 takes 0 mins, 14 iterations

cluster 5(N=128) has 3 sub-cluster at 3 (17), ICL=68<>31
split 5 into 3 clusters
cluster 6(N=73) has 6 sub-cluster at 6 (19), ICL=36<>31
split 6 into 6 clusters
cluster 4(N=157) has 8 sub-cluster at 8 (25), ICL=22<>31
cluster 3(N=42) has 3 sub-cluster at 3 (10), ICL=18<>31
cluster 2(N=518) has 3 sub-cluster at 3 (8), ICL=15<>31
cluster 7(N=42) has 2 sub-cluster at 2 (7), ICL=6.6<>31
cluster 2(N=518) has 3 sub-cluster at 3 (8), ICL=0<>31
Model Refinement takes 0.1 mins(max 2: 0.033)
Fit Model 4 of (6/10) K=7->14 N=2420
EM 12 takes 0.017 mins, 24 iterations

cluster 3(N=112) has 3 sub-cluster at 3 (12), ICL=63<>34
split 3 into 3 clusters
cluster 5(N=8) has 2 sub-cluster at 2 (100), ICL=62<>34
split 5 into 2 clusters
cluster 12(N=109) has 7 sub-cluster at 7 (31), ICL=28<>34
cluster 4(N=295) has 8 sub-cluster at 8 (47), ICL=20<>34
cluster 7(N=92) has 4 sub-cluster at 5 (28), ICL=11<>34
cluster 8(N=50) has 2 sub-cluster at 2 (15), ICL=10<>34
cluster 11(N=72) has 4 sub-cluster at 4 (26), ICL=9.1<>34
cluster 6(N=140) has 3 sub-cluster at 3 (16), ICL=3.4<>34
cluster 9(N=12) has 2 sub-cluster at 2 (23), ICL=0.65<>34
cluster 3(N=112) has 3 sub-cluster at 3 (12), ICL=0<>34
Model Refinement takes 0.17 mins(max 1: 0.033)
Fit Model 5 of (6/10) K=12->15 N=4841
EM 12 takes 0.017 mins, 19 iterations

cluster 5(N=565) has 2 sub-cluster at 2 (6), ICL=57<>37
split 5 into 2 clusters
cluster 3(N=104) has 2 sub-cluster at 2 (6), ICL=52<>37
split 3 into 2 clusters
cluster 8(N=63) has 5 sub-cluster at 5 (99), ICL=37<>37
cluster 12(N=198) has 7 sub-cluster at 7 (33), ICL=27<>37
cluster 11(N=138) has 7 sub-cluster at 8 (40), ICL=23<>37
cluster 4(N=148) has 6 sub-cluster at 7 (22), ICL=17<>37
cluster 9(N=47) has 4 sub-cluster at 4 (26), ICL=17<>37
cluster 7(N=23) has 2 sub-cluster at 2 (11), ICL=13<>37
cluster 10(N=58) has 2 sub-cluster at 2 (10), ICL=5.8<>37
cluster 6(N=456) has 3 sub-cluster at 3 (18), ICL=0.81<>37
cluster 3(N=104) has 2 sub-cluster at 2 (6), ICL=0<>37
Model Refinement takes 0.23 mins(max 1: 0.05)
Fit Model 6 of (6/10) K=12->14 N=9682
EM 14 takes 0.017 mins, 12 iterations

cluster 8(N=902) has 2 sub-cluster at 2 (32), ICL=59<>40
split 8 into 2 clusters
cluster 14(N=391) has 2 sub-cluster at 2 (16), ICL=44<>40
split 14 into 2 clusters
cluster 4(N=122) has 2 sub-cluster at 2 (8), ICL=25<>40
cluster 11(N=88) has 4 sub-cluster at 4 (23), ICL=20<>40
cluster 3(N=70) has 4 sub-cluster at 4 (47), ICL=18<>40
cluster 10(N=166) has 5 sub-cluster at 6 (37), ICL=18<>40
cluster 7(N=334) has 4 sub-cluster at 5 (20), ICL=17<>40
cluster 12(N=144) has 4 sub-cluster at 7 (59), ICL=16<>40
cluster 5(N=317) has 2 sub-cluster at 2 (9), ICL=10<>40
cluster 13(N=301) has 6 sub-cluster at 7 (27), ICL=7<>40
cluster 3(N=70) has 4 sub-cluster at 4 (47), ICL=0<>40
Model Refinement takes 0.35 mins(max 1: 0.067)
Fit Model 7 of (6/10) K=14->16 N=9682
EM 16 takes 0 mins, 3 iterations

cluster 4(N=122) has 8 sub-cluster at 8 (25), ICL=32<>40
cluster 12(N=87) has 4 sub-cluster at 4 (19), ICL=23<>40
cluster 3(N=70) has 4 sub-cluster at 4 (47), ICL=18<>40
cluster 13(N=143) has 2 sub-cluster at 2 (100), ICL=16<>40
cluster 16(N=205) has 7 sub-cluster at 7 (35), ICL=16<>40
cluster 15(N=228) has 6 sub-cluster at 7 (28), ICL=16<>40
cluster 7(N=347) has 6 sub-cluster at 7 (37), ICL=16<>40
cluster 5(N=316) has 3 sub-cluster at 3 (39), ICL=11<>40
cluster 11(N=166) has 6 sub-cluster at 8 (20), ICL=11<>40
cluster 10(N=51) has 2 sub-cluster at 2 (14), ICL=11<>40
cluster 8(N=410) has 2 sub-cluster at 2 (11), ICL=8.3<>40
cluster 14(N=299) has 2 sub-cluster at 2 (17), ICL=6.1<>40
cluster 3(N=70) has 4 sub-cluster at 4 (47), ICL=0<>40
Model Refinement takes 0.37 mins(max 1: 0.067)
Fit Model 8 of (6/10) K=16->16 N=9682
EM 16 takes 0 mins, 3 iterations

Process completed at8

Major Iteration (Trans) (6/4) takes 1.4 mins
Fit Model 1 of 10 with 8 clusters
=> results in  8 clusters
Fit Model 2 of 10 with 21 clusters
=> results in  13 clusters
Fit Model 3 of 10 with 23 clusters
=> results in  19 clusters
Fit Model 4 of 10 with 26 clusters
=> results in  21 clusters
Fit Model 5 of 10 with 25 clusters
=> results in  21 clusters
Error: processing vignette 'immunoClust.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'immunoClust.tex' failed.
LaTeX errors:
! LaTeX Error: File `inputenx.sty' not found.

Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)

! Emergency stop.
<read *> 
         
l.15 ^^M
        
!  ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘immunoClust.Rnw’

SUMMARY: processing the following file failed:
  ‘immunoClust.Rnw’

Error: Vignette re-building failed.
Execution halted