############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 flowTime ### ############################################################################## ############################################################################## * checking for file ‘flowTime/DESCRIPTION’ ... OK * preparing ‘flowTime’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘gating-vignette.Rmd’ using rmarkdown Quitting from gating-vignette.Rmd:52-54 [unnamed-chunk-4] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `add_ggcyto()`: ! object '+.gg' not found --- Backtrace: ▆ 1. ├─ggplot2::autoplot(data[21:24], x = "FSC-A", y = "SSC-A") 2. └─ggcyto:::autoplot.flowSet(data[21:24], x = "FSC-A", y = "SSC-A") 3. ├─ggcyto::ggcyto(...) 4. └─ggcyto:::ggcyto.flowSet(...) 5. ├─p + ggcyto_par_default() 6. └─p + ggcyto_par_default() 7. └─ggcyto:::add_ggcyto(e1, e2, e2name) 8. ├─e1 + e2.new 9. └─e1 + e2.new 10. └─ggcyto:::add_ggcyto(e1, e2, e2name) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'gating-vignette.Rmd' failed with diagnostics: object '+.gg' not found --- failed re-building ‘gating-vignette.Rmd’ --- re-building ‘steady-state-vignette.Rmd’ using rmarkdown --- finished re-building ‘steady-state-vignette.Rmd’ --- re-building ‘time-course-vignette.Rmd’ using rmarkdown --- finished re-building ‘time-course-vignette.Rmd’ SUMMARY: processing the following file failed: ‘gating-vignette.Rmd’ Error: Vignette re-building failed. Execution halted