############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 derfinderPlot ### ############################################################################## ############################################################################## * checking for file ‘derfinderPlot/DESCRIPTION’ ... OK * preparing ‘derfinderPlot’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘derfinderPlot.Rmd’ using rmarkdown Quitting from derfinderPlot.Rmd:239-242 [plotOverview] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `validObject()`: ! invalid class "GGbio" object: invalid object for slot "ggplot" in class "GGbio": got class "ggplot2::ggplot", should be or extend class "gg_OR_NULL" --- Backtrace: ▆ 1. └─derfinderPlot::plotOverview(...) 2. ├─ggplot2::autoplot(seqinfo(regions)) 3. └─ggbio::autoplot(seqinfo(regions)) 4. └─ggbio (local) .local(object, ...) 5. └─ggbio::GGbio(p, data = object) 6. ├─BiocGenerics::do.call(...) 7. ├─base::do.call(...) 8. └─methods (local) ``(...) 9. ├─methods::initialize(value, ...) 10. └─methods::initialize(value, ...) 11. └─methods::validObject(.Object) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'derfinderPlot.Rmd' failed with diagnostics: invalid class "GGbio" object: invalid object for slot "ggplot" in class "GGbio": got class "ggplot2::ggplot", should be or extend class "gg_OR_NULL" --- failed re-building ‘derfinderPlot.Rmd’ SUMMARY: processing the following file failed: ‘derfinderPlot.Rmd’ Error: Vignette re-building failed. Execution halted