############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data biodbUniprot ### ############################################################################## ############################################################################## * checking for file ‘biodbUniprot/DESCRIPTION’ ... OK * preparing ‘biodbUniprot’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘biodbUniprot.Rmd’ using rmarkdown INFO [17:34:24.146] Loading definitions from package biodb version 1.18.0. INFO [17:34:28.560] Loading definitions from package biodbChebi version 1.16.0. INFO [17:34:28.647] Loading definitions from package biodbHmdb version 1.16.0. INFO [17:34:28.737] Loading definitions from package biodbNcbi version 1.14.0. INFO [17:34:28.805] Loading definitions from package biodbNci version 1.14.0. INFO [17:34:28.824] Loading definitions from package biodbUniprot version 1.16.0. INFO [17:34:29.167] Load 2 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/uniprot-958d776f924f3e7a3bae586fa731b40c. Quitting from biodbUniprot.Rmd:67-69 [unnamed-chunk-4] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'biodbUniprot.Rmd' failed with diagnostics: `chk::vld_null(encoding) || chk::vld_whole_number(encoding) || ` must be TRUE` chk::vld_string(encoding)` must be TRUE. --- failed re-building ‘biodbUniprot.Rmd’ SUMMARY: processing the following file failed: ‘biodbUniprot.Rmd’ Error: Vignette re-building failed. Execution halted