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###
### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RiboProfiling
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* checking for file ‘RiboProfiling/DESCRIPTION’ ... OK
* preparing ‘RiboProfiling’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘RiboProfiling.Rnw’ using knitr
2025-09-12 18:15:26.726 R[12324:270724143] XType: com.apple.fonts is not accessible.
2025-09-12 18:15:26.727 R[12324:270724143] XType: XTFontStaticRegistry is enabled.

Quitting from RiboProfiling.Rnw:114-131 [riboSeqfromBam]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `validObject()`:
! invalid class "GGbio" object: invalid object for slot "ggplot" in class "GGbio": got class "ggplot2::ggplot", should be or extend class "gg_OR_NULL"
---
Backtrace:
     x
  1. +-base::suppressMessages(...)
  2. | \-base::withCallingHandlers(...)
  3. +-base::suppressWarnings(...)
  4. | \-base::withCallingHandlers(...)
  5. \-RiboProfiling::riboSeqFromBAM(...)
  6.   \-RiboProfiling::plotSummarizedCov(listCovSummarized)
  7.     +-BiocGenerics::lapply(...)
  8.     \-base::lapply(...)
  9.       \-RiboProfiling (local) FUN(X[[i]], ...)
 10.         +-ggplot2::ggplot(iSumCov, ggplot2::aes(start, values))
 11.         \-ggbio:::ggplot.Vector(iSumCov, ggplot2::aes(start, values))
 12.           \-ggbio::GGbio(gg, data = data)
 13.             +-BiocGenerics::do.call(...)
 14.             +-base::do.call(...)
 15.             \-methods (local) `<fn>`(...)
 16.               +-methods::initialize(value, ...)
 17.               \-methods::initialize(value, ...)
 18.                 \-methods::validObject(.Object)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'RiboProfiling.Rnw' failed with diagnostics:
invalid class "GGbio" object: invalid object for slot "ggplot" in class "GGbio": got class "ggplot2::ggplot", should be or extend class "gg_OR_NULL"
--- failed re-building ‘RiboProfiling.Rnw’

SUMMARY: processing the following file failed:
  ‘RiboProfiling.Rnw’

Error: Vignette re-building failed.
Execution halted