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### Running command:
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###   /home/biocbuild/R/R/bin/R CMD check --install=check:RgnTX.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings RgnTX_1.11.1.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/RgnTX.Rcheck’
* using R version 4.5.0 (2025-04-11)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RgnTX/DESCRIPTION’ ... OK
* this is package ‘RgnTX’ version ‘1.11.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RgnTX’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                          user system elapsed
shiftedZScoreTx         47.851  0.116  48.103
permTestTxIA_customPick 27.243  0.067  27.374
permTestTxIA            26.417  0.064  26.544
permTestTx              22.713  0.016  22.786
permTestTx_customPick   19.334  0.028  19.405
permTestTx_customAll    18.593  0.056  18.690
overlapCountsTxIA        9.772  0.040   9.835
overlapWidthTx           8.770  0.040   8.829
distanceTx               8.096  0.120   8.232
randomizeFeaturesTx      7.337  0.020   7.371
getStopCodon             6.681  0.016   6.711
GRangesList2GRanges      5.844  0.263   6.123
randomizeFeaturesTxIA    5.222  0.016   5.249
randomizeTransByOrder    5.168  0.016   5.195
overlapCountsTx          5.053  0.064   5.128
randomizeTx              5.007  0.036   5.054
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK