############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 PCAtools ### ############################################################################## ############################################################################## * checking for file ‘PCAtools/DESCRIPTION’ ... OK * preparing ‘PCAtools’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘PCAtools.Rmd’ using rmarkdown Warning: ggrepel: 18 unlabeled data points (too many overlaps). Consider increasing max.overlaps Warning: ggrepel: 22 unlabeled data points (too many overlaps). Consider increasing max.overlaps Quitting from PCAtools.Rmd:406-426 [ex9] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `loadNamespace()`: ! there is no package called 'ggalt' --- Backtrace: ▆ 1. ├─PCAtools::biplot(...) 2. └─base::loadNamespace(x) 3. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 4. └─base (local) withOneRestart(expr, restarts[[1L]]) 5. └─base (local) doWithOneRestart(return(expr), restart) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'PCAtools.Rmd' failed with diagnostics: there is no package called 'ggalt' --- failed re-building ‘PCAtools.Rmd’ SUMMARY: processing the following file failed: ‘PCAtools.Rmd’ Error: Vignette re-building failed. Execution halted