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### Running command:
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###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:KEGGREST.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings KEGGREST_1.49.1.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/KEGGREST.Rcheck’
* using R version 4.5.1 Patched (2025-08-23 r88802)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘KEGGREST/DESCRIPTION’ ... OK
* this is package ‘KEGGREST’ version ‘1.49.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘KEGGREST’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘KEGGREST-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: color.pathway.by.objects
> ### Title: Client-side interface to obtain an url for a KEGG pathway
> ###   diagram with a given set of genes marked
> ### Aliases: mark.pathway.by.objects color.pathway.by.objects
> ### Keywords: datasets
> 
> ### ** Examples
> 
> url <- color.pathway.by.objects(
+     "path:eco00260", c("eco:b0002", "eco:c00263"),
+     c("#ff0000", "#00ff00"),
+     c("#ffff00", "yellow")
+ )
Error in curl::curl_fetch_memory(url, handle = handle) : 
  Failure when receiving data from the peer [www.kegg.jp]:
GnuTLS recv error (-110): The TLS connection was non-properly terminated.
Calls: color.pathway.by.objects ... request_fetch.write_memory -> <Anonymous> -> raise_libcurl_error
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
keggGet       1.529  0.133   7.129
listDatabases 0.745  0.042  76.699
keggList      0.611  0.049  96.970
keggLink      0.360  0.030  37.785
keggConv      0.348  0.022   9.023
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘KEGGREST_unit_tests.R’
 ERROR
Running the tests in ‘tests/KEGGREST_unit_tests.R’ failed.
Last 13 lines of output:
  1 Test Suite : 
  KEGGREST RUnit Tests - 12 test functions, 1 error, 0 failures
  ERROR in test_mark_and_color_pathways_by_objects: Error in curl::curl_fetch_memory(url, handle = handle) : 
    Failure when receiving data from the peer [www.kegg.jp]:
  GnuTLS recv error (-110): The TLS connection was non-properly terminated.
  
  Test files with failing tests
  
     test_KEGGREST.R 
       test_mark_and_color_pathways_by_objects 
  
  
  Error in BiocGenerics:::testPackage("KEGGREST") : 
    unit tests failed for package KEGGREST
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 ERRORs
See
  ‘/home/biocbuild/bbs-3.22-bioc/meat/KEGGREST.Rcheck/00check.log’
for details.