############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 FLAMES ### ############################################################################## ############################################################################## * checking for file ‘FLAMES/DESCRIPTION’ ... OK * preparing ‘FLAMES’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘FLAMES_vignette.Rmd’ using rmarkdown Quitting from FLAMES_vignette.Rmd:168-173 [unnamed-chunk-8] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `lock()`: ! Cannot open lock file: No such file or directory --- Backtrace: ▆ 1. ├─FLAMES::run_step(mspipeline, "barcode_demultiplex") 2. └─FLAMES::run_step(mspipeline, "barcode_demultiplex") 3. ├─FLAMES:::barcode_demultiplex(pipeline) 4. └─FLAMES:::barcode_demultiplex(pipeline) 5. └─base::lapply(...) 6. └─FLAMES (local) FUN(X[[i]], ...) 7. └─FLAMES::find_barcode(...) 8. └─FLAMES::cutadapt(...) 9. └─basilisk::basiliskRun(...) 10. └─basilisk::basiliskStart(...) 11. └─basilisk::obtainEnvironmentPath(env) 12. └─basilisk::lockExternalDir(exdir, exclusive = FALSE) 13. └─dir.expiry::lockDirectory(path, ...) 14. └─filelock::lock(plock, exclusive = FALSE) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'FLAMES_vignette.Rmd' failed with diagnostics: Cannot open lock file: No such file or directory --- failed re-building ‘FLAMES_vignette.Rmd’ SUMMARY: processing the following file failed: ‘FLAMES_vignette.Rmd’ Error: Vignette re-building failed. Execution halted