############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data DEGreport ### ############################################################################## ############################################################################## * checking for file ‘DEGreport/DESCRIPTION’ ... OK * preparing ‘DEGreport’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘DEGreport.Rmd’ using rmarkdown Quitting from DEGreport.Rmd:93-95 [qc] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! object is invalid: - every label must be named. --- Backtrace: ▆ 1. └─DEGreport::degQC(counts, design[["group"]], pvalue = res[["pvalue"]]) 2. └─DEGreport::degMean(pvalue, counts) 3. └─ggplot2::labs(list(x = "p-values", y = "# genes")) 4. └─ggplot2::class_labels(args) 5. └─S7::new_object(labels) 6. └─S7::validate(object, recursive = !parent_validated) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'DEGreport.Rmd' failed with diagnostics: object is invalid: - every label must be named. --- failed re-building ‘DEGreport.Rmd’ SUMMARY: processing the following file failed: ‘DEGreport.Rmd’ Error: Vignette re-building failed. Execution halted