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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:BiocFileCache.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings BiocFileCache_3.0.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.22-bioc/meat/BiocFileCache.Rcheck’
* using R version 4.5.2 Patched (2025-11-04 r88984)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 16.0.0 (clang-1600.0.26.6)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.7.8
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘BiocFileCache/DESCRIPTION’ ... OK
* this is package ‘BiocFileCache’ version ‘3.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘BiocFileCache’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘BiocFileCache-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: BiocFileCache-class
> ### Title: BiocFileCache class
> ### Aliases: BiocFileCache-class BiocFileCache
> ###   bfccache,BiocFileCacheBase-method bfccache bfccache,missing-method
> ###   length,BiocFileCacheBase-method bfcrid bfcrid,missing-method
> ###   bfcrid,BiocFileCacheReadOnly-method bfcrid,BiocFileCache-method
> ###   [,BiocFileCache,character,missing-method
> ###   [,BiocFileCacheReadOnly,character,missing-method
> ###   [,BiocFileCache,missing,missing-method
> ###   [,BiocFileCacheReadOnly,missing,missing-method
> ###   [[,BiocFileCacheBase,character,missing-method
> ###   [[<-,BiocFileCache,character,missing,character-method
> ###   bfcnew,missing-method bfcnew,BiocFileCache-method bfcnew
> ###   bfcadd,missing-method bfcadd,BiocFileCache-method bfcadd
> ###   bfcinfo,missing-method bfcinfo,BiocFileCacheBase-method bfcinfo
> ###   bfcrid,tbl_bfc-method bfcpath,missing-method
> ###   bfcpath,BiocFileCacheBase-method bfcpath bfcrpath,missing-method
> ###   bfcrpath,BiocFileCacheBase-method bfcrpath bfcupdate,missing-method
> ###   bfcupdate,BiocFileCache-method bfcupdate bfcmeta<-
> ###   bfcmeta<-,BiocFileCacheBase-method bfcmetaremove,missing-method
> ###   bfcmetaremove,BiocFileCacheBase-method bfcmetaremove
> ###   bfcmetalist,missing-method bfcmetalist,BiocFileCacheBase-method
> ###   bfcmetalist bfcmeta,missing-method bfcmeta,BiocFileCacheBase-method
> ###   bfcmeta bfcquerycols,missing-method
> ###   bfcquerycols,BiocFileCacheBase-method bfcquerycols
> ###   bfcquery,missing-method bfcquery,BiocFileCacheBase-method bfcquery
> ###   bfccount,missing-method bfccount,BiocFileCacheBase-method bfccount
> ###   bfccount,tbl_bfc-method bfcneedsupdate,missing-method
> ###   bfcneedsupdate,BiocFileCacheBase-method bfcneedsupdate
> ###   bfcdownload,missing-method bfcdownload,BiocFileCache-method
> ###   bfcdownload bfcremove,missing-method bfcremove,BiocFileCache-method
> ###   bfcremove bfcsync,missing-method bfcsync,BiocFileCache-method bfcsync
> ###   exportbfc,missing-method exportbfc,BiocFileCacheBase-method exportbfc
> ###   importbfc,character-method importbfc cleanbfc,missing-method
> ###   cleanbfc,BiocFileCache-method cleanbfc removebfc,missing-method
> ###   removebfc,BiocFileCache-method removebfc
> ###   show,BiocFileCacheBase-method
> 
> ### ** Examples
> 
> # bfc <- BiocFileCache()            # global cache
> # bfc
> bfc0 <- BiocFileCache(tempfile())         # temporary catch for examples
> bfccache(bfc0)
[1] "/tmp/RtmpLJ9D0A/file20449b8b93f"
> length(bfc0)
[1] 0
> path <- bfcnew(bfc0, "NewResource")
> path
                                                     BFC1 
"/tmp/RtmpLJ9D0A/file20449b8b93f/2047e89fce8_2047e89fce8" 
> fl1 <- tempfile(); file.create(fl1)
[1] TRUE
> bfcadd(bfc0, "Test1", fl1)                 # copy
                                                         BFC2 
"/tmp/RtmpLJ9D0A/file20449b8b93f/2045dc8aefc_file204153b243f" 
> fl2 <- tempfile(); file.create(fl2)
[1] TRUE
> bfcadd(bfc0, "Test2", fl2, action="move")         # move
                                                         BFC3 
"/tmp/RtmpLJ9D0A/file20449b8b93f/204548fdfcf_file2042258527e" 
> fl3 <- tempfile(); file.create(fl3)
[1] TRUE
> add3 <- bfcadd(bfc0, "Test3", fl3, rtype="local", action="asis")  # reference
> rid3 <- names(add3)
> 
> bfc0
class: BiocFileCache
bfccache: /tmp/RtmpLJ9D0A/file20449b8b93f
bfccount: 4
For more information see: bfcinfo() or bfcquery()
> file.exists(fl1)                                # TRUE
[1] TRUE
> file.exists(fl2)                                # FALSE
[1] FALSE
> file.exists(fl3)                                # TRUE
[1] TRUE
> 
> # add a remote resource
> url <- "https://httpbin.org/get"
> bfcadd(bfc0, "TestWeb", fpath=url)
Warning: download failed
  web resource path: ‘https://httpbin.org/get’
  local file path: ‘/tmp/RtmpLJ9D0A/file20449b8b93f/20435320a35_get’
  reason: HTTP 503 Service Unavailable.
Warning: bfcadd() failed; resource removed
  rid: BFC5
  fpath: ‘https://httpbin.org/get’
  reason: download failed
Error in .util_download(x, rid[i], proxy, progress, config, "bfcadd()",  : 
  bfcadd() failed; see warnings()
Calls: bfcadd -> bfcadd -> .util_download
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  Backtrace:
      ▆
   1. ├─BiocFileCache::bfcadd(bfc, "test-3", url, rtype = "web") at test_BiocFileCache_class.R:182:1
   2. └─BiocFileCache::bfcadd(bfc, "test-3", url, rtype = "web")
   3.   └─BiocFileCache:::.util_download(...)
  ── Failure ('test_makeBiocFileCacheFromDataFrame.R:70:5'): makeBiocFileCacheFromDataFrame works ──
  Expected `length(list.files(bfccache(newbfc)))` to be identical to 2L.
  Differences:
  1/1 mismatches
  [1] 3 - 2 == 1
  
  [ FAIL 3 | WARN 4 | SKIP 1 | PASS 85 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 ERRORs
See
  ‘/Users/biocbuild/bbs-3.22-bioc/meat/BiocFileCache.Rcheck/00check.log’
for details.