############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 BOBaFIT ### ############################################################################## ############################################################################## * checking for file ‘BOBaFIT/DESCRIPTION’ ... OK * preparing ‘BOBaFIT’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘BOBaFIT.Rmd’ using rmarkdown Quitting from BOBaFIT.Rmd:149-155 [DRrefit_plot 1] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'BOBaFIT.Rmd' failed with diagnostics: The `facets` argument of `facet_grid()` was deprecated in ggplot2 2.2.0 and is now defunct. ℹ Please use the `rows` argument instead. --- failed re-building ‘BOBaFIT.Rmd’ --- re-building ‘Data-Preparation.Rmd’ using rmarkdown --- finished re-building ‘Data-Preparation.Rmd’ SUMMARY: processing the following file failed: ‘BOBaFIT.Rmd’ Error: Vignette re-building failed. Execution halted