############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data AlphaMissenseR ### ############################################################################## ############################################################################## * checking for file ‘AlphaMissenseR/DESCRIPTION’ ... OK * preparing ‘AlphaMissenseR’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘alphafold.Rmd’ using rmarkdown --- finished re-building ‘alphafold.Rmd’ --- re-building ‘benchmarking.Rmd’ using rmarkdown 2025-09-12 15:36:15.051 R[54255:224845983] XType: Using static font registry. Quitting from benchmarking.Rmd:297-330 [raincloud] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'benchmarking.Rmd' failed with diagnostics: Problem while converting geom to grob. ℹ Error occurred in the 3rd layer. Caused by error in `fun()`: ! argument "layout" is missing, with no default --- failed re-building ‘benchmarking.Rmd’ --- re-building ‘clinvar.Rmd’ using rmarkdown --- finished re-building ‘clinvar.Rmd’ --- re-building ‘introduction.Rmd’ using rmarkdown --- finished re-building ‘introduction.Rmd’ --- re-building ‘issues.Rmd’ using rmarkdown --- finished re-building ‘issues.Rmd’ SUMMARY: processing the following file failed: ‘benchmarking.Rmd’ Error: Vignette re-building failed. Execution halted