############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data msPurity ### ############################################################################## ############################################################################## * checking for file ‘msPurity/DESCRIPTION’ ... OK * preparing ‘msPurity’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘msPurity-lcmsms-data-processing-and-spectral-matching-vignette.Rmd’ using rmarkdown Quitting from msPurity-lcmsms-data-processing-and-spectral-matching-vignette.Rmd:37-52 [unnamed-chunk-1] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `library()`: ! there is no package called 'xcms' --- Backtrace: ▆ 1. └─base::library(xcms) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'msPurity-lcmsms-data-processing-and-spectral-matching-vignette.Rmd' failed with diagnostics: there is no package called 'xcms' --- failed re-building ‘msPurity-lcmsms-data-processing-and-spectral-matching-vignette.Rmd’ --- re-building ‘msPurity-spectral-database-vignette.Rmd’ using rmarkdown --- finished re-building ‘msPurity-spectral-database-vignette.Rmd’ --- re-building ‘msPurity-vignette.Rmd’ using rmarkdown Quitting from msPurity-vignette.Rmd:145-171 [unnamed-chunk-4] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `library()`: ! there is no package called 'xcms' --- Backtrace: ▆ 1. ├─base::suppressPackageStartupMessages(library(xcms)) 2. │ └─base::withCallingHandlers(expr, packageStartupMessage = function(c) tryInvokeRestart("muffleMessage")) 3. └─base::library(xcms) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'msPurity-vignette.Rmd' failed with diagnostics: there is no package called 'xcms' --- failed re-building ‘msPurity-vignette.Rmd’ SUMMARY: processing the following files failed: ‘msPurity-lcmsms-data-processing-and-spectral-matching-vignette.Rmd’ ‘msPurity-vignette.Rmd’ Error: Vignette re-building failed. Execution halted