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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data memes
###
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* checking for file ‘memes/DESCRIPTION’ ... OK
* preparing ‘memes’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘core_ame.Rmd’ using rmarkdown
--- finished re-building ‘core_ame.Rmd’

--- re-building ‘core_dreme.Rmd’ using rmarkdown
--- finished re-building ‘core_dreme.Rmd’

--- re-building ‘core_fimo.Rmd’ using rmarkdown
--- finished re-building ‘core_fimo.Rmd’

--- re-building ‘core_tomtom.Rmd’ using rmarkdown
2025-04-21 16:51:26.955 R[20499:1000532243] XType: Using static font registry.

Quitting from core_tomtom.Rmd:114-117 [unnamed-chunk-9]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `view_motifs_prep()`:
! unused argument (flip.neg = flip.neg)
---
Backtrace:
    ▆
 1. ├─example_tomtom$tomtom[[1]]$match_motif[1:2] %>% view_motifs()
 2. └─universalmotif::view_motifs(.)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'core_tomtom.Rmd' failed with diagnostics:
unused argument (flip.neg = flip.neg)
--- failed re-building ‘core_tomtom.Rmd’

--- re-building ‘install_guide.Rmd’ using rmarkdown
--- finished re-building ‘install_guide.Rmd’

--- re-building ‘integrative_analysis.Rmd’ using rmarkdown
--- finished re-building ‘integrative_analysis.Rmd’

--- re-building ‘tidy_motifs.Rmd’ using rmarkdown
--- finished re-building ‘tidy_motifs.Rmd’

SUMMARY: processing the following file failed:
  ‘core_tomtom.Rmd’

Error: Vignette re-building failed.
Execution halted