############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data fgsea ### ############################################################################## ############################################################################## * checking for file ‘fgsea/DESCRIPTION’ ... OK * preparing ‘fgsea’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘fgsea-tutorial.Rmd’ using rmarkdown --- finished re-building ‘fgsea-tutorial.Rmd’ --- re-building ‘geseca-tutorial.Rmd’ using rmarkdown Quitting from geseca-tutorial.Rmd:294-300 [unnamed-chunk-21] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `if (unique.feature.exp == 0) ...`: ! missing value where TRUE/FALSE needed --- Backtrace: ▆ 1. └─fgsea::plotCoregulationProfileReduction(...) 2. └─Seurat::FeaturePlot(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'geseca-tutorial.Rmd' failed with diagnostics: missing value where TRUE/FALSE needed --- failed re-building ‘geseca-tutorial.Rmd’ SUMMARY: processing the following file failed: ‘geseca-tutorial.Rmd’ Error: Vignette re-building failed. Execution halted