############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data extraChIPs ### ############################################################################## ############################################################################## * checking for file ‘extraChIPs/DESCRIPTION’ ... OK * preparing ‘extraChIPs’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘differential_signal_fixed.Rmd’ using rmarkdown Quitting from differential_signal_fixed.Rmd:190-195 [plot-overlaps] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `.makeUpSet()`: ! Please install 'SimpleUpset' to use this function. --- Backtrace: ▆ 1. ├─extraChIPs::plotOverlaps(...) 2. └─extraChIPs::plotOverlaps(...) 3. └─extraChIPs (local) .local(x, ...) 4. ├─extraChIPs::plotOverlaps(...) 5. └─extraChIPs::plotOverlaps(...) 6. └─extraChIPs (local) .local(x, ...) 7. └─extraChIPs:::.makeUpSet(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'differential_signal_fixed.Rmd' failed with diagnostics: Please install 'SimpleUpset' to use this function. --- failed re-building ‘differential_signal_fixed.Rmd’ --- re-building ‘differential_signal_sliding.Rmd’ using rmarkdown --- finished re-building ‘differential_signal_sliding.Rmd’ --- re-building ‘range_based_functions.Rmd’ using rmarkdown --- finished re-building ‘range_based_functions.Rmd’ SUMMARY: processing the following file failed: ‘differential_signal_fixed.Rmd’ Error: Vignette re-building failed. Execution halted