############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data cfdnakit ### ############################################################################## ############################################################################## * checking for file ‘cfdnakit/DESCRIPTION’ ... OK * preparing ‘cfdnakit’: * checking DESCRIPTION meta-information ... OK * installing the package to process help pages * saving partial Rd database * creating vignettes ... ERROR --- re-building ‘cfdnakit-vignette.Rmd’ using rmarkdown Quitting from cfdnakit-vignette.Rmd:244-248 [Reading PoN samples and plot scaled value] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `nbrOfSegments()`: ! could not find function "nbrOfSegments" --- Backtrace: ▆ 1. ├─cfdnakit::segmentByPSCB(sample_zscore) 2. │ ├─PSCBS::segmentByCBS(...) 3. │ └─PSCBS::segmentByCBS.data.frame(...) 4. │ ├─PSCBS::segmentByCBS(...) 5. │ └─PSCBS::segmentByCBS.default(...) 6. │ ├─base::as.list(fitList) 7. │ └─listenv:::as.list.listenv(fitList) 8. │ └─base::mget(vars[ok], envir = x, inherits = FALSE) 9. └─base::local(...) 10. └─base::eval.parent(substitute(eval(quote(expr), envir))) 11. └─base::eval(expr, p) 12. └─base::eval(expr, p) 13. └─base::eval(...) 14. └─base::eval(...) 15. ├─future::value(future) 16. └─future:::value.Future(future) 17. └─future:::signalConditions(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'cfdnakit-vignette.Rmd' failed with diagnostics: could not find function "nbrOfSegments" --- failed re-building ‘cfdnakit-vignette.Rmd’ SUMMARY: processing the following file failed: ‘cfdnakit-vignette.Rmd’ Error: Vignette re-building failed. Execution halted