############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ReactomeContentService4R ### ############################################################################## ############################################################################## * checking for file ‘ReactomeContentService4R/DESCRIPTION’ ... OK * preparing ‘ReactomeContentService4R’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘ReactomeContentService4R.Rmd’ using rmarkdown Quitting from ReactomeContentService4R.Rmd:48-56 [class-species] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `curl::curl_fetch_memory()`: ! Timeout was reached [reactome.org]: Connection timed out after 10003 milliseconds --- Backtrace: ▆ 1. └─ReactomeContentService4R::getSchemaClass(...) 2. └─ReactomeContentService4R:::.matchSpecies(species, "taxId") 3. └─ReactomeContentService4R::getSpecies() 4. └─ReactomeContentService4R:::.retrieveData(url, as = "text") 5. └─base::tryCatch(...) 6. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 7. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 8. └─value[[3L]](cond) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'ReactomeContentService4R.Rmd' failed with diagnostics: Timeout was reached [reactome.org]: Connection timed out after 10003 milliseconds --- failed re-building ‘ReactomeContentService4R.Rmd’ SUMMARY: processing the following file failed: ‘ReactomeContentService4R.Rmd’ Error: Vignette re-building failed. Execution halted