############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MsBackendMetaboLights ### ############################################################################## ############################################################################## * checking for file ‘MsBackendMetaboLights/DESCRIPTION’ ... OK * preparing ‘MsBackendMetaboLights’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘MsBackendMetaboLights.Rmd’ using rmarkdown Quitting from MsBackendMetaboLights.Rmd:102-110 [unnamed-chunk-6] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `file()`: ! cannot open the connection to 'ftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS39/a_MTBLS39_the_plasticity_of_the_grapevine_berry_transcriptome_metabolite_profiling_mass_spectrometry.txt' --- Backtrace: ▆ 1. └─utils::read.table(...) 2. └─base::file(file, "rt") ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'MsBackendMetaboLights.Rmd' failed with diagnostics: cannot open the connection to 'ftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS39/a_MTBLS39_the_plasticity_of_the_grapevine_berry_transcriptome_metabolite_profiling_mass_spectrometry.txt' --- failed re-building ‘MsBackendMetaboLights.Rmd’ SUMMARY: processing the following file failed: ‘MsBackendMetaboLights.Rmd’ Error: Vignette re-building failed. Execution halted