##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data HybridExpress
###
##############################################################################
##############################################################################


* checking for file ‘HybridExpress/DESCRIPTION’ ... OK
* preparing ‘HybridExpress’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘HybridExpress.Rmd’ using rmarkdown

Quitting from HybridExpress.Rmd:402-405 [unnamed-chunk-16]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Can't find method for generic `&(e1, e2)`:
- e1: <patchwork>
- e2: <theme>
---
Backtrace:
    ▆
 1. └─HybridExpress::plot_expression_partitions(exp_partitions, group_by = "Class")
 2.   ├─patchwork::wrap_plots(...)
 3.   │ └─patchwork:::is_valid_plot(..1)
 4.   │   └─ggplot2::is.ggplot(x)
 5.   │     └─ggplot2::is_ggplot(x)
 6.   │       └─S7::S7_inherits(x, class_ggplot)
 7.   └─S7:::Ops.S7_object(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'HybridExpress.Rmd' failed with diagnostics:
Can't find method for generic `&(e1, e2)`:
- e1: <patchwork>
- e2: <theme>
--- failed re-building ‘HybridExpress.Rmd’

SUMMARY: processing the following file failed:
  ‘HybridExpress.Rmd’

Error: Vignette re-building failed.
Execution halted