############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data HDF5Array ### ############################################################################## ############################################################################## * checking for file ‘HDF5Array/DESCRIPTION’ ... OK * preparing ‘HDF5Array’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘HDF5Array_performance.Rmd’ using rmarkdown Quitting from HDF5Array_performance.Rmd:112-115 [brain_s] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `rhdf5::H5Fopen()`: ! HDF5. File accessibility. Unable to open file. --- Backtrace: ▆ 1. └─HDF5Array::TENxMatrix(brain_s_path, group = "mm10") 2. └─HDF5Array::TENxMatrixSeed(filepath, group) 3. └─HDF5Array::H5SparseMatrixSeed(filepath, group) 4. └─HDF5Array:::.check_group(filepath, group) 5. └─h5mread::h5exists(filepath, group) 6. └─h5mread:::.H5Fopen(filepath, flags = "H5F_ACC_RDONLY") 7. ├─base::suppressMessages(rhdf5::H5Fopen(name, flags = flags, fapl = fapl)) 8. │ └─base::withCallingHandlers(...) 9. └─rhdf5::H5Fopen(name, flags = flags, fapl = fapl) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'HDF5Array_performance.Rmd' failed with diagnostics: HDF5. File accessibility. Unable to open file. --- failed re-building ‘HDF5Array_performance.Rmd’ SUMMARY: processing the following file failed: ‘HDF5Array_performance.Rmd’ Error: Vignette re-building failed. Execution halted