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### Running command:
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###   /home/biocbuild/R/R/bin/R CMD check --install=check:GenomicPlot.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings GenomicPlot_1.6.1.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/GenomicPlot.Rcheck’
* using R Under development (unstable) (2025-02-19 r87757)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘GenomicPlot/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘GenomicPlot’ version ‘1.6.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... INFO
Imports includes 25 non-default packages.
Importing from so many packages makes the package vulnerable to any of
them becoming unavailable.  Move as many as possible to Suggests and
use conditionally.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘GenomicPlot’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
get_targeted_genes: no visible binding for global variable ‘5'UTR’
get_targeted_genes: no visible binding for global variable ‘3'UTR’
plot_bam_correlation: no visible binding for global variable ‘.’
plot_peak_annotation: no visible binding for global variable ‘.’
Undefined global functions or variables:
  . 3'UTR 5'UTR
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                  user system elapsed
plot_start_end_with_random      23.149  4.450  26.334
plot_region                     19.408  6.722  19.482
plot_locus                      19.612  5.977  21.661
plot_5parts_metagene            15.039  6.103  17.715
plot_locus_with_random          14.225  4.083  14.792
plot_start_end                  15.323  2.292  17.137
plot_peak_annotation            10.379  0.494  10.901
get_targeted_genes               8.798  0.347   9.165
get_txdb_features                7.850  0.192   8.057
prepare_5parts_genomic_features  6.405  0.060   6.477
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘test-plotFunctions.R’
 ERROR
Running the tests in ‘tests/test-plotFunctions.R’ failed.
Last 13 lines of output:
   1. └─GenomicPlot::plot_5parts_metagene(...)
   2.   └─GenomicPlot::parallel_scoreMatrixBin(...)
   3.     └─GenomicPlot::start_parallel(nc)
   4.       └─parallel::makeCluster(fnc, type = "FORK")
   5.         └─parallel::makeForkCluster(nnodes = spec, ...)
  
  Error:
  ! Test failed
  Backtrace:
      ▆
   1. ├─testthat::test_that(...)
   2. │ └─withr (local) `<fn>`()
   3. └─reporter$stop_if_needed()
   4.   └─rlang::abort("Test failed", call = NULL)
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.21-bioc/meat/GenomicPlot.Rcheck/00check.log’
for details.