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### Running command:
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###   /home/biocbuild/R/R/bin/R CMD check --install=check:GenomicDataCommons.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings GenomicDataCommons_1.32.1.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/GenomicDataCommons.Rcheck’
* using R Under development (unstable) (2025-02-19 r87757)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘GenomicDataCommons/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘GenomicDataCommons’ version ‘1.32.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘GenomicDataCommons’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘GenomicDataCommons-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: aggregations
> ### Title: aggregations
> ### Aliases: aggregations aggregations.GDCQuery aggregations.GDCResponse
> 
> ### ** Examples
> 
> # Number of each file type
> res = files() |> facet(c('type','data_type')) |> aggregations()
Error in curl::curl_fetch_memory(url, handle = handle) : 
  Timeout was reached [api.gdc.cancer.gov]: Connection timed out after 10002 milliseconds
Calls: aggregations ... request_fetch.write_memory -> <Anonymous> -> raise_libcurl_error
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  Error in `curl::curl_fetch_memory(url, handle = handle)`: Timeout was reached [api.gdc.cancer.gov]: Connection timed out after 10001 milliseconds
  Backtrace:
      ▆
   1. ├─GenomicDataCommons::status() at test_api.R:4:5
   2. │ └─GenomicDataCommons:::.gdc_get(...)
   3. │   └─httr::GET(uri, add_headers(`X-Auth-Token` = token), ...)
   4. │     └─httr:::request_perform(req, hu$handle$handle)
   5. │       ├─httr:::request_fetch(req$output, req$url, handle)
   6. │       └─httr:::request_fetch.write_memory(req$output, req$url, handle)
   7. │         └─curl::curl_fetch_memory(url, handle = handle)
   8. └─curl:::raise_libcurl_error(...)
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 44 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 ERRORs
See
  ‘/home/biocbuild/bbs-3.21-bioc/meat/GenomicDataCommons.Rcheck/00check.log’
for details.