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###
### Running command:
###
###   E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:BiocNeighbors.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings BiocNeighbors_2.2.0.tar.gz
###
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* using log directory 'E:/biocbuild/bbs-3.21-bioc/meat/BiocNeighbors.Rcheck'
* using R version 4.5.1 (2025-06-13 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'BiocNeighbors/DESCRIPTION' ... OK
* this is package 'BiocNeighbors' version '2.2.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'BiocNeighbors' can be installed ... WARNING
Found the following significant warnings:
  E:/biocbuild/bbs-3.21-bioc/R/library/assorthead/include/annoy/annoylib.h:1308:29: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wformat=]
  E:/biocbuild/bbs-3.21-bioc/R/library/assorthead/include/annoy/annoylib.h:1308:29: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wformat=]
  E:/biocbuild/bbs-3.21-bioc/R/library/assorthead/include/annoy/annoylib.h:1118:39: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wformat=]
See 'E:/biocbuild/bbs-3.21-bioc/meat/BiocNeighbors.Rcheck/00install.out' for details.
* used C++ compiler: 'G__~1.EXE (GCC) 14.2.0'
* checking C++ specification ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files for x64 is not available
File 'E:/biocbuild/bbs-3.21-bioc/R/library/BiocNeighbors/libs/x64/BiocNeighbors.dll':
  Found '_exit', possibly from '_exit' (C)
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf. The detected symbols are linked into
the code but might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  'E:/biocbuild/bbs-3.21-bioc/meat/BiocNeighbors.Rcheck/00check.log'
for details.

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###
### Running command:
###
###   E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL BiocNeighbors
###
##############################################################################
##############################################################################


* installing to library 'E:/biocbuild/bbs-3.21-bioc/R/library'
* installing *source* package 'BiocNeighbors' ...
** this is package 'BiocNeighbors' version '2.2.0'
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 14.2.0'
using C++17
g++  -std=gnu++17 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I../inst/include -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/assorthead/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c RcppExports.cpp -o RcppExports.o
g++  -std=gnu++17 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I../inst/include -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/assorthead/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c annoy.cpp -o annoy.o
In file included from E:/biocbuild/bbs-3.21-bioc/R/library/assorthead/include/knncolle_annoy/knncolle_annoy.hpp:10,
                 from annoy.cpp:15:
E:/biocbuild/bbs-3.21-bioc/R/library/assorthead/include/annoy/annoylib.h: In instantiation of 'S Annoy::AnnoyIndex<S, T, Distance, Random, ThreadedBuildPolicy>::_make_tree(const std::vector<T>&, bool, Random&, ThreadedBuildPolicy&) [with S = int; T = float; Distance = Annoy::Euclidean; Random = Annoy::Kiss64Random; ThreadedBuildPolicy = Annoy::AnnoyIndexSingleThreadedBuildPolicy]':
E:/biocbuild/bbs-3.21-bioc/R/library/assorthead/include/annoy/annoylib.h:1188:30:   required from 'void Annoy::AnnoyIndex<S, T, Distance, Random, ThreadedBuildPolicy>::thread_build(int, int, ThreadedBuildPolicy&) [with S = int; T = float; Distance = Annoy::Euclidean; Random = Annoy::Kiss64Random; ThreadedBuildPolicy = Annoy::AnnoyIndexSingleThreadedBuildPolicy]'
 1188 |       thread_roots.push_back(_make_tree(indices, true, _random, threaded_build_policy));
      |                              ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/assorthead/include/annoy/annoylib.h:1410:24:   required from 'static void Annoy::AnnoyIndexSingleThreadedBuildPolicy::build(Annoy::AnnoyIndex<S, T, D, Random, Annoy::AnnoyIndexSingleThreadedBuildPolicy>*, int, int) [with S = int; T = float; D = Annoy::Euclidean; Random = Annoy::Kiss64Random]'
 1410 |     annoy->thread_build(q, 0, threaded_build_policy);
      |     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/assorthead/include/annoy/annoylib.h:969:46:   required from 'bool Annoy::AnnoyIndex<S, T, Distance, Random, ThreadedBuildPolicy>::build(int, int, char**) [with S = int; T = float; Distance = Annoy::Euclidean; Random = Annoy::Kiss64Random; ThreadedBuildPolicy = Annoy::AnnoyIndexSingleThreadedBuildPolicy]'
  969 |     ThreadedBuildPolicy::template build<S, T>(this, q, n_threads);
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/assorthead/include/knncolle_annoy/knncolle_annoy.hpp:265:23:   required from 'knncolle_annoy::AnnoyPrebuilt<Distance_, Dim_, Index_, Float_, InternalIndex_, InternalData_>::AnnoyPrebuilt(const Matrix_&, const knncolle_annoy::AnnoyOptions&) [with Matrix_ = knncolle::L2NormalizedMatrix<knncolle::SimpleMatrix<int, int, double> >; Distance_ = Annoy::Euclidean; Dim_ = int; Index_ = int; Float_ = double; InternalIndex_ = int; InternalData_ = float]'
  265 |         my_index.build(options.num_trees);
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/assorthead/include/knncolle_annoy/knncolle_annoy.hpp:359:16:   required from 'knncolle::Prebuilt<typename Matrix_::dimension_type, typename Matrix_::index_type, Float_>* knncolle_annoy::AnnoyBuilder<Distance_, Matrix_, Float_, InternalIndex_, InternalData_>::build_raw(const Matrix_&) const [with Distance_ = Annoy::Euclidean; Matrix_ = knncolle::L2NormalizedMatrix<knncolle::SimpleMatrix<int, int, double> >; Float_ = double; InternalIndex_ = int; InternalData_ = float; typename Matrix_::dimension_type = int; typename Matrix_::index_type = int]'
  359 |         return new AnnoyPrebuilt<Distance_, typename Matrix_::dimension_type, typename Matrix_::index_type, Float_, InternalIndex_, InternalData_>(data, my_options);
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/assorthead/include/knncolle_annoy/knncolle_annoy.hpp:358:97:   required from here
  358 |     knncolle::Prebuilt<typename Matrix_::dimension_type, typename Matrix_::index_type, Float_>* build_raw(const Matrix_& data) const {
      |                                                                                                 ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/assorthead/include/annoy/annoylib.h:1308:29: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wformat=]
 1308 |         annoylib_showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n",
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1309 |           children_indices[0].size(), children_indices[1].size());
      |           ~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                                   |
      |                                   std::vector<int>::size_type {aka long long unsigned int}
E:/biocbuild/bbs-3.21-bioc/R/library/assorthead/include/annoy/annoylib.h:81:66: note: in definition of macro 'annoylib_showUpdate'
   81 |   #define annoylib_showUpdate(...) { __ERROR_PRINTER_OVERRIDE__( __VA_ARGS__ ); }
      |                                                                  ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/assorthead/include/annoy/annoylib.h:1308:64: note: format string is defined here
 1308 |         annoylib_showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n",
      |                                                              ~~^
      |                                                                |
      |                                                                long int
      |                                                              %lld
E:/biocbuild/bbs-3.21-bioc/R/library/assorthead/include/annoy/annoylib.h:1308:29: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wformat=]
 1308 |         annoylib_showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n",
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1309 |           children_indices[0].size(), children_indices[1].size());
      |                                       ~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                                                               |
      |                                                               std::vector<int>::size_type {aka long long unsigned int}
E:/biocbuild/bbs-3.21-bioc/R/library/assorthead/include/annoy/annoylib.h:81:66: note: in definition of macro 'annoylib_showUpdate'
   81 |   #define annoylib_showUpdate(...) { __ERROR_PRINTER_OVERRIDE__( __VA_ARGS__ ); }
      |                                                                  ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/assorthead/include/annoy/annoylib.h:1308:88: note: format string is defined here
 1308 |         annoylib_showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n",
      |                                                                                      ~~^
      |                                                                                        |
      |                                                                                        long int
      |                                                                                      %lld
E:/biocbuild/bbs-3.21-bioc/R/library/assorthead/include/annoy/annoylib.h: In instantiation of 'S Annoy::AnnoyIndex<S, T, Distance, Random, ThreadedBuildPolicy>::_make_tree(const std::vector<T>&, bool, Random&, ThreadedBuildPolicy&) [with S = int; T = float; Distance = Annoy::Manhattan; Random = Annoy::Kiss64Random; ThreadedBuildPolicy = Annoy::AnnoyIndexSingleThreadedBuildPolicy]':
E:/biocbuild/bbs-3.21-bioc/R/library/assorthead/include/annoy/annoylib.h:1188:30:   required from 'void Annoy::AnnoyIndex<S, T, Distance, Random, ThreadedBuildPolicy>::thread_build(int, int, ThreadedBuildPolicy&) [with S = int; T = float; Distance = Annoy::Manhattan; Random = Annoy::Kiss64Random; ThreadedBuildPolicy = Annoy::AnnoyIndexSingleThreadedBuildPolicy]'
 1188 |       thread_roots.push_back(_make_tree(indices, true, _random, threaded_build_policy));
      |                              ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/assorthead/include/annoy/annoylib.h:1410:24:   required from 'static void Annoy::AnnoyIndexSingleThreadedBuildPolicy::build(Annoy::AnnoyIndex<S, T, D, Random, Annoy::AnnoyIndexSingleThreadedBuildPolicy>*, int, int) [with S = int; T = float; D = Annoy::Manhattan; Random = Annoy::Kiss64Random]'
 1410 |     annoy->thread_build(q, 0, threaded_build_policy);
      |     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/assorthead/include/annoy/annoylib.h:969:46:   required from 'bool Annoy::AnnoyIndex<S, T, Distance, Random, ThreadedBuildPolicy>::build(int, int, char**) [with S = int; T = float; Distance = Annoy::Manhattan; Random = Annoy::Kiss64Random; ThreadedBuildPolicy = Annoy::AnnoyIndexSingleThreadedBuildPolicy]'
  969 |     ThreadedBuildPolicy::template build<S, T>(this, q, n_threads);
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/assorthead/include/knncolle_annoy/knncolle_annoy.hpp:265:23:   required from 'knncolle_annoy::AnnoyPrebuilt<Distance_, Dim_, Index_, Float_, InternalIndex_, InternalData_>::AnnoyPrebuilt(const Matrix_&, const knncolle_annoy::AnnoyOptions&) [with Matrix_ = knncolle::SimpleMatrix<int, int, double>; Distance_ = Annoy::Manhattan; Dim_ = int; Index_ = int; Float_ = double; InternalIndex_ = int; InternalData_ = float]'
  265 |         my_index.build(options.num_trees);
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/assorthead/include/knncolle_annoy/knncolle_annoy.hpp:359:16:   required from 'knncolle::Prebuilt<typename Matrix_::dimension_type, typename Matrix_::index_type, Float_>* knncolle_annoy::AnnoyBuilder<Distance_, Matrix_, Float_, InternalIndex_, InternalData_>::build_raw(const Matrix_&) const [with Distance_ = Annoy::Manhattan; Matrix_ = knncolle::SimpleMatrix<int, int, double>; Float_ = double; InternalIndex_ = int; InternalData_ = float; typename Matrix_::dimension_type = int; typename Matrix_::index_type = int]'
  359 |         return new AnnoyPrebuilt<Distance_, typename Matrix_::dimension_type, typename Matrix_::index_type, Float_, InternalIndex_, InternalData_>(data, my_options);
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/assorthead/include/knncolle_annoy/knncolle_annoy.hpp:358:97:   required from here
  358 |     knncolle::Prebuilt<typename Matrix_::dimension_type, typename Matrix_::index_type, Float_>* build_raw(const Matrix_& data) const {
      |                                                                                                 ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/assorthead/include/annoy/annoylib.h:1308:29: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wformat=]
 1308 |         annoylib_showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n",
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1309 |           children_indices[0].size(), children_indices[1].size());
      |           ~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                                   |
      |                                   std::vector<int>::size_type {aka long long unsigned int}
E:/biocbuild/bbs-3.21-bioc/R/library/assorthead/include/annoy/annoylib.h:81:66: note: in definition of macro 'annoylib_showUpdate'
   81 |   #define annoylib_showUpdate(...) { __ERROR_PRINTER_OVERRIDE__( __VA_ARGS__ ); }
      |                                                                  ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/assorthead/include/annoy/annoylib.h:1308:64: note: format string is defined here
 1308 |         annoylib_showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n",
      |                                                              ~~^
      |                                                                |
      |                                                                long int
      |                                                              %lld
E:/biocbuild/bbs-3.21-bioc/R/library/assorthead/include/annoy/annoylib.h:1308:29: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wformat=]
 1308 |         annoylib_showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n",
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1309 |           children_indices[0].size(), children_indices[1].size());
      |                                       ~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                                                               |
      |                                                               std::vector<int>::size_type {aka long long unsigned int}
E:/biocbuild/bbs-3.21-bioc/R/library/assorthead/include/annoy/annoylib.h:81:66: note: in definition of macro 'annoylib_showUpdate'
   81 |   #define annoylib_showUpdate(...) { __ERROR_PRINTER_OVERRIDE__( __VA_ARGS__ ); }
      |                                                                  ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/assorthead/include/annoy/annoylib.h:1308:88: note: format string is defined here
 1308 |         annoylib_showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n",
      |                                                                                      ~~^
      |                                                                                        |
      |                                                                                        long int
      |                                                                                      %lld
E:/biocbuild/bbs-3.21-bioc/R/library/assorthead/include/annoy/annoylib.h: In instantiation of 'bool Annoy::AnnoyIndex<S, T, Distance, Random, ThreadedBuildPolicy>::load(const char*, bool, char**) [with S = int; T = float; Distance = Annoy::Manhattan; Random = Annoy::Kiss64Random; ThreadedBuildPolicy = Annoy::AnnoyIndexSingleThreadedBuildPolicy]':
E:/biocbuild/bbs-3.21-bioc/R/library/assorthead/include/annoy/annoylib.h:1069:8:   required from here
 1069 |   bool load(const char* filename, bool prefault=false, char** error=NULL) {
      |        ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/assorthead/include/annoy/annoylib.h:1118:39: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wformat=]
 1118 |     if (_verbose) annoylib_showUpdate("found %lu roots with degree %d\n", _roots.size(), m);
      |                                       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  ~~~~~~~~~~~~~
      |                                                                                      |
      |                                                                                      std::vector<int>::size_type {aka long long unsigned int}
E:/biocbuild/bbs-3.21-bioc/R/library/assorthead/include/annoy/annoylib.h:81:66: note: in definition of macro 'annoylib_showUpdate'
   81 |   #define annoylib_showUpdate(...) { __ERROR_PRINTER_OVERRIDE__( __VA_ARGS__ ); }
      |                                                                  ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/assorthead/include/annoy/annoylib.h:1118:48: note: format string is defined here
 1118 |     if (_verbose) annoylib_showUpdate("found %lu roots with degree %d\n", _roots.size(), m);
      |                                              ~~^
      |                                                |
      |                                                long unsigned int
      |                                              %llu
E:/biocbuild/bbs-3.21-bioc/R/library/assorthead/include/annoy/annoylib.h: In instantiation of 'bool Annoy::AnnoyIndex<S, T, Distance, Random, ThreadedBuildPolicy>::load(const char*, bool, char**) [with S = int; T = float; Distance = Annoy::Euclidean; Random = Annoy::Kiss64Random; ThreadedBuildPolicy = Annoy::AnnoyIndexSingleThreadedBuildPolicy]':
E:/biocbuild/bbs-3.21-bioc/R/library/assorthead/include/annoy/annoylib.h:1069:8:   required from here
 1069 |   bool load(const char* filename, bool prefault=false, char** error=NULL) {
      |        ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/assorthead/include/annoy/annoylib.h:1118:39: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wformat=]
 1118 |     if (_verbose) annoylib_showUpdate("found %lu roots with degree %d\n", _roots.size(), m);
      |                                       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  ~~~~~~~~~~~~~
      |                                                                                      |
      |                                                                                      std::vector<int>::size_type {aka long long unsigned int}
E:/biocbuild/bbs-3.21-bioc/R/library/assorthead/include/annoy/annoylib.h:81:66: note: in definition of macro 'annoylib_showUpdate'
   81 |   #define annoylib_showUpdate(...) { __ERROR_PRINTER_OVERRIDE__( __VA_ARGS__ ); }
      |                                                                  ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/assorthead/include/annoy/annoylib.h:1118:48: note: format string is defined here
 1118 |     if (_verbose) annoylib_showUpdate("found %lu roots with degree %d\n", _roots.size(), m);
      |                                              ~~^
      |                                                |
      |                                                long unsigned int
      |                                              %llu
g++  -std=gnu++17 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I../inst/include -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/assorthead/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c exhaustive.cpp -o exhaustive.o
g++  -std=gnu++17 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I../inst/include -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/assorthead/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c find_mutual_nns.cpp -o find_mutual_nns.o
g++  -std=gnu++17 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I../inst/include -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/assorthead/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c generics.cpp -o generics.o
g++  -std=gnu++17 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I../inst/include -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/assorthead/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c hnsw.cpp -o hnsw.o
g++  -std=gnu++17 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I../inst/include -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/assorthead/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c kmknn.cpp -o kmknn.o
g++  -std=gnu++17 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I../inst/include -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/assorthead/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c vptree.cpp -o vptree.o
g++ -shared -s -static-libgcc -o BiocNeighbors.dll tmp.def RcppExports.o annoy.o exhaustive.o find_mutual_nns.o generics.o hnsw.o kmknn.o vptree.o -LC:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools45/x86_64-w64-mingw32.static.posix/lib -LE:/biocbuild/bbs-3.21-bioc/R/bin/x64 -lR
installing to E:/biocbuild/bbs-3.21-bioc/R/library/00LOCK-BiocNeighbors/00new/BiocNeighbors/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BiocNeighbors)

R version 4.5.1 (2025-06-13 ucrt) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

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Type 'contributors()' for more information and
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Type 'demo()' for some demos, 'help()' for on-line help, or
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> library(testthat)
> library(BiocNeighbors)
> test_check("BiocNeighbors")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 195 ]
> 
> proc.time()
   user  system elapsed 
   5.51    0.56    6.25