############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data BatchQC ### ############################################################################## ############################################################################## * checking for file ‘BatchQC/DESCRIPTION’ ... OK * preparing ‘BatchQC’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘BatchQC_Intro.Rmd’ using rmarkdown Quitting from BatchQC_Intro.Rmd:548-557 [unnamed-chunk-23] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `pm[[2]]`: ! subscript out of bounds --- Backtrace: ▆ 1. └─BatchQC::volcano_plot(...) 2. ├─plotly::ggplotly(vol_plot, tooltip = c("x", "y", "text")) 3. └─plotly:::ggplotly.ggplot(vol_plot, tooltip = c("x", "y", "text")) 4. └─plotly::gg2list(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'BatchQC_Intro.Rmd' failed with diagnostics: subscript out of bounds --- failed re-building ‘BatchQC_Intro.Rmd’ --- re-building ‘BatchQC_examples.Rmd’ using rmarkdown --- finished re-building ‘BatchQC_examples.Rmd’ SUMMARY: processing the following file failed: ‘BatchQC_Intro.Rmd’ Error: Vignette re-building failed. Execution halted