############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data annotation ### ############################################################################## ############################################################################## * checking for file ‘annotation/DESCRIPTION’ ... OK * preparing ‘annotation’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘Annotating_Genomic_Ranges.Rmd’ using rmarkdown --- finished re-building ‘Annotating_Genomic_Ranges.Rmd’ --- re-building ‘Annotation_Resources.Rmd’ using rmarkdown Quitting from Annotation_Resources.Rmd:773-777 [unnamed-chunk-50] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `.chooseEnsemblMirror()`: ! Unable to query any Ensembl site --- Backtrace: ▆ 1. └─biomaRt::useEnsembl(biomart = "genes", dataset = "hsapiens_gene_ensembl") 2. └─biomaRt:::.chooseEnsemblMirror(mirror = mirror, http_config = http_config) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Annotation_Resources.Rmd' failed with diagnostics: Unable to query any Ensembl site --- failed re-building ‘Annotation_Resources.Rmd’ SUMMARY: processing the following file failed: ‘Annotation_Resources.Rmd’ Error: Vignette re-building failed. Execution halted