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### Running command:
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###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:curatedPCaData.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings curatedPCaData_1.2.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.20-data-experiment/meat/curatedPCaData.Rcheck’
* using R version 4.4.3 (2025-02-28)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.2 LTS
* using session charset: UTF-8
* checking for file ‘curatedPCaData/DESCRIPTION’ ... OK
* this is package ‘curatedPCaData’ version ‘1.2.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘curatedPCaData’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                   user system elapsed
getPCaSummaryStudies            195.021  6.004 219.292
getPCaSummarySamples             25.974  1.142  29.358
getPCaSummarySurv                25.732  0.707  28.675
getPCaSummaryTable               25.287  0.659  28.209
curatedPCaDatasets_abida         16.385  0.584  18.110
curatedPCaDatasets_taylor        14.868  0.414  16.436
curatedPCaDatasets_tcga          13.474  0.457  15.143
getPCa                           13.435  0.456  15.145
curatedPCaDatasets_barbieri      12.495  0.310  13.883
curatedPCaDatasets_ren           12.115  0.302  13.446
curatedPCaDatasets_weiner        11.144  0.426  12.525
curatedPCaDatasets_friedrich     10.778  0.312  12.010
curatedPCaDatasets_sun           10.733  0.306  11.967
curatedPCaDatasets_kim           10.597  0.291  11.859
curatedPCaDatasets_icgcca        10.533  0.320  11.781
curatedPCaDatasets_igc           10.529  0.295  11.754
curatedPCaDatasets_kunderfranco  10.484  0.267  11.726
curatedPCaDatasets_wang           9.931  0.262  11.121
curatedPCaDatasets_wallace        9.880  0.280  11.084
curatedPCaDatasets_chandran       9.780  0.254  11.017
curatedPCaDatasets_true           8.945  0.231  10.020
curatedPCaDatasets_barwick        7.907  0.281   8.963
curatedPCaDatasets_baca           4.443  0.115   5.036
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘native_tests.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK