############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 zFPKM ### ############################################################################## ############################################################################## * checking for file ‘zFPKM/DESCRIPTION’ ... OK * preparing ‘zFPKM’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘zFPKM.Rmd’ using rmarkdown trying URL 'ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE94nnn/GSE94802/suppl/GSE94802_Minkina_etal_normalized_FPKM.csv.gz' Quitting from zFPKM.Rmd:33-70 [unnamed-chunk-1] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `download.file()`: ! cannot open URL 'ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE94nnn/GSE94802/suppl/GSE94802_Minkina_etal_normalized_FPKM.csv.gz' --- Backtrace: ▆ 1. ├─SummarizedExperiment::SummarizedExperiment(...) 2. │ └─SummarizedExperiment:::normarg_assays(assays, as.null.if.no.assay = TRUE) 3. ├─S4Vectors::SimpleList(...) 4. └─global getSpecificGEOSupp(gse94802_fpkm) 5. └─utils::download.file(url, temp) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'zFPKM.Rmd' failed with diagnostics: cannot open URL 'ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE94nnn/GSE94802/suppl/GSE94802_Minkina_etal_normalized_FPKM.csv.gz' --- failed re-building ‘zFPKM.Rmd’ SUMMARY: processing the following file failed: ‘zFPKM.Rmd’ Error: Vignette re-building failed. Execution halted